Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00224 ATGCAAGCTTCTCAGCTTCATAGAGGTCAACATATGTCGAAAAGACTGTGTTATCAGCCACTTCAAGGAGTGGATGCCTACTGTGTCTCCCAATTTCAAACTTTAGGTCGCCAATTATATACCAATGCTGGCAACGAAAGAGCTCAGTTCAATCTTCAAGACATCAGTGATCGGTACTGCACTTTGGAGTCGTCCTCGGGAAGCCACGGTTATGCAACTCGCAGCTCGACATCGACCGTCACTTTCTCATCCAATGGGAGTCCTGCTGATCAGCATAATTCCCCTGACAATACGTATGGCTCACCAGTAAGCGGATCCTGCATAACAGATGATATTAGTGATTTTAGGCACAAACTGCTGGAATTGGAAACTGTGATGCTTGGCCCTGATTCTGATATAATTGATAGTTTTGATAGTTTCTACCAGGAAGGAACAGAGAATTCAGAAGTGGGAAGTTGGGGACAAGTGATGGATGCTATCACTAAAGGGAACTTAAAAAAGATCCTAATAGCTTGTGCTAAGGCCGTGTCCGATAATGATGCCTTAATGGCACAATGGCTTATGGATGAACTGCGCAAGATGGTGTCGGTTCGGGGTGAACCGATGCAGAGATTGGGAGCTTATATGTTGGAGGGGCTGGTTGCACGGTCAGCCTTCTCAGGCAGTAGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGCATGGAGCTCCTCTCTTATATGCATGTTTTGTACGATGTTTGCCCGTATTTCAAATTTGGATACATGTCTGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTACACATTATTGATTTCCAAATCTCTCAGGGTACTCAATGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCTGGTGGACCGCCTCACATTCGTATAACTGGCATAGACGATCCTGCATCAGCTCACGCTCGGAGAGGCGGCCTAGATATCGTTGGGATGAGGCTTTCCAAGTTAGCAAAGTTATTTAATGTCCCATTTGAGTTTCACTCGGCTGCCATCTCTGGCTGCGACGTTCAGCAGAAAGACTTGGGAATTCGACGAGGGGAGGCTTTAGCAGTGAACTTTGCATTCATGCTACACCATATGCCAGATGAGAGCGTAAGCACCGAAAACCATCGAGATCGGCTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTAGTGACGCTTGTTGAACAAGAATCCAACACGAACACCGCTGCATTCTTTCCCCGGTTCATCGAAACGCTGGATTACTACAACGCCATGTTCGAATCAATCGACGTTACTCTTCCAAGGCAGCACAAGGAACGAATCAACATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGGGCAGAGAGAGTAGAACGACACGAGCTACTCGGAAAGTGGCGACTGCGATTCTCAATGGCAGGATTCACTCCCTACCCATTAAGCTCTTTGGTGAATGCTACCATAAAAACGTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAGAAAGAAGGGGCTCTATATCTAGGCTGGATGGATAGGGATTTGGTTGCTTCTTGTGCATGGAAGTGA 1608 46.02 MQASQLHRGQHMSKRLCYQPLQGVDAYCVSQFQTLGRQLYTNAGNERAQFNLQDISDRYCTLESSSGSHGYATRSSTSTVTFSSNGSPADQHNSPDNTYGSPVSGSCITDDISDFRHKLLELETVMLGPDSDIIDSFDSFYQEGTENSEVGSWGQVMDAITKGNLKKILIACAKAVSDNDALMAQWLMDELRKMVSVRGEPMQRLGAYMLEGLVARSAFSGSSIYKSLRCKEPASMELLSYMHVLYDVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAHARRGGLDIVGMRLSKLAKLFNVPFEFHSAAISGCDVQQKDLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFSMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEKEGALYLGWMDRDLVASCAWK 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1031828 1033435 - CmoCh02G002240.1 Cmo02g00224 375821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00224 535 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 535 IPR005202 -
Cmo02g00224 535 Pfam GRAS domain family 165 535 IPR005202 -
Cmo02g00224 535 ProSiteProfiles GRAS family profile. 156 535 IPR005202 -
Cmo02g00224 535 MobiDBLite consensus disorder prediction 65 103 - -
Cmo02g00224 535 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 18 535 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00224 Cmo20g00673 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01045 Cmo-Chr1:8241594 Cmo02g00224 Cmo-Chr2:1031828 7.78E-154 dispersed
Cmo02g00224 Cmo-Chr2:1031828 Cmo06g00666 Cmo-Chr6:3372485 0 dispersed
Cmo02g01093 Cmo-Chr2:6633549 Cmo02g00224 Cmo-Chr2:1031828 2.65E-79 dispersed
Cmo15g01000 Cmo-Chr15:5387954 Cmo02g00224 Cmo-Chr2:1031828 3.03E-73 dispersed
Cmo19g00971 Cmo-Chr19:8774120 Cmo02g00224 Cmo-Chr2:1031828 3.54E-51 dispersed
Cmo16g00983 Cmo-Chr16:6731154 Cmo02g00224 Cmo-Chr2:1031828 0 wgd
Cmo02g00224 Cmo-Chr2:1031828 Cmo20g00673 Cmo-Chr20:3276967 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9203 PF03514 GRAS 9.00E-135 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00224 - - csv:101221914 970.304