Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00237 ATGGCGGATTCGGATAACGAATCGGGAGGTCACAATAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGTGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGTGGTGGAGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGATTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGTGGCGTTTATGGCAGTGGTGGATTTCACCAAATGGGAATCGGCGGTGGAAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG 633 53.4 MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTMGGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHHQGGVYGSGGFHQMGIGGGKGGNGGSGTGHR 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1117825 1118457 + CmoCh02G002370.1 Cmo02g00237 375834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00237 210 MobiDBLite consensus disorder prediction 1 24 - -
Cmo02g00237 210 SUPERFAMILY Histone-fold 24 128 IPR009072 GO:0046982
Cmo02g00237 210 MobiDBLite consensus disorder prediction 116 149 - -
Cmo02g00237 210 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 186 - -
Cmo02g00237 210 MobiDBLite consensus disorder prediction 1 21 - -
Cmo02g00237 210 Gene3D Histone, subunit A 15 131 IPR009072 GO:0046982
Cmo02g00237 210 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Cmo02g00237 210 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Cmo02g00237 210 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cmo02g00237 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Cmo02g00237 210 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo02g00237 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 186 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00237 Cmo-Chr2:1117825 Cmo06g00687 Cmo-Chr6:3488191 9.54E-65 dispersed
Cmo02g01358 Cmo-Chr2:8082176 Cmo02g00237 Cmo-Chr2:1117825 1.21E-08 transposed
Cmo16g01006 Cmo-Chr16:6914249 Cmo02g00237 Cmo-Chr2:1117825 1.93E-60 transposed
Cmo17g01087 Cmo-Chr17:8978176 Cmo02g00237 Cmo-Chr2:1117825 1.84E-51 transposed
Cmo02g00237 Cmo-Chr2:1117825 Cmo20g00682 Cmo-Chr20:3345325 4.28E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9207 PF00808 CBFD_NFYB_HMF 2.10E-27 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00237 K08065 - csv:101219076 239.58