Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00242 ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA 456 46.93 MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1139058 1139513 - CmoCh02G002420.1 Cmo02g00242 375839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00242 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 151 - -
Cmo02g00242 151 SUPERFAMILY RING/U-box 84 143 - -
Cmo02g00242 151 SMART ring_2 95 136 IPR001841 -
Cmo02g00242 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 142 IPR013083 -
Cmo02g00242 151 PANTHER - 1 151 IPR044249 -
Cmo02g00242 151 Pfam Ring finger domain 94 137 IPR001841 -
Cmo02g00242 151 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00242 Cmo-Chr2:1139058 Cmo11g01816 Cmo-Chr11:12725811 1.57E-60 dispersed
Cmo02g00242 Cmo-Chr2:1139058 Cmo20g00697 Cmo-Chr20:3455420 8.60E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00242 K16285 - csv:101216645 290.812