Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00244 ATGCTCCCCAAATGGAAGTTTTTGCTCTGTTTTCTTTTTTCCTTTCAAGGAAGAAATTCAACACATTTGGCAGTGCTTGGATTTGATAAGAGCTCTGATAATCTGAGCTCAGAGAGATTTGAAAATTCATTTGGAAAGATGGGTGTTATGTGTGATTTTTGTGGGGATCAAAGGGCAATGGTTTTCTGTCGATCTGATGTTGCTTGTTTGTGCTTATCTTGTGATCGTAATGTTCATTCGGCTAACGCCTTGTCGAGGCGTCATACAAGAACGCTGTTATGTGAGAGATGCCATTTGCAACCTGCCTCAGTAAGATGTATTGATGAGAGGGTTTCTCTGTGTCAAAATTGTGACTGGACGGGTCATGGCACGTCTACGACTTCATCATCGCACAAGAGGCAAGCTATCAATTGTTACTCTGGTTGTCCATCAGCTGCTGAGCTTTCTTCCATCTGGTCCTTTGTTTTGGAGGTTCCCTCTGTGAATGATGCTTGTGAGACAGAGATGGGATTGATGAGCATTTCTGAGACCAACTTGACGGGAGCTTGGTGCCCTTCGGAGAATAACGACGCCTGTCGAAGAATGCTCGGGTCGACTGAAGCCAGAGATGTTTGCAGCAGGGACAAATCAAATGTTTTGGTTGGATCATCTTCACTCTCTGACTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTAATATGGCTGTACCCAAGTTTTGCTGTCCTGGAACGAAACTTCCCGGATTCTGTGGCGACGATGACGACGACATCTACAAGGAGTTTGACATGGATGAAATGGATTTGAATCTCGAAAATTACGAGGAGCTATTTGGTATGAGCCTTAATCATTCTGAAGATCTTTTCGAGAACGGTGGAATCGATAGCCTTTTCGAGGCCAAAGGCTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGCTCTCCTGTTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCTGACTCGGTTATGAGTACTAAAACCGAACCGATTCTCTGTTTTAATTCAAGGCAAGCATCGGGTGTGTCGTTTTCTGGCGTTACGGGTGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCTTCTTCCATGCTTCTAATGGGAGAGCCTCCTCCTTGGTGTGCTCCTGGCACTGAAAGTTCGATCCCGTCTTCTGATCGTAACAATGCCGTTCTACGTTACAAGGAGAAAAAGAAGACGCGCAAATTTGAGAAACGAGTAAGATACGCAACACGCAAAGCTCGAGCCGATGTGAGAAGGCGAGTGAAGGGACGCTTTGTGAAGGTCGGAGAGGCGTATGATTACGACCCGTTGAGCCAGACTAGAAGCTGCTGA 1389 46.36 MLPKWKFLLCFLFSFQGRNSTHLAVLGFDKSSDNLSSERFENSFGKMGVMCDFCGDQRAMVFCRSDVACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPASVRCIDERVSLCQNCDWTGHGTSTTSSSHKRQAINCYSGCPSAAELSSIWSFVLEVPSVNDACETEMGLMSISETNLTGAWCPSENNDACRRMLGSTEARDVCSRDKSNVLVGSSSLSDFGSRPHTSDQPVELANMAVPKFCCPGTKLPGFCGDDDDDIYKEFDMDEMDLNLENYEELFGMSLNHSEDLFENGGIDSLFEAKGFEDSVCHSAVAAEGSPVGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQASGVSFSGVTGESSAGDYQDCGASSMLLMGEPPPWCAPGTESSIPSSDRNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKVGEAYDYDPLSQTRSC 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1142560 1146601 - CmoCh02G002440.1 Cmo02g00244 375841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00244 462 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 47 461 - -
Cmo02g00244 462 Pfam B-box zinc finger 50 91 IPR000315 GO:0008270
Cmo02g00244 462 SMART bboxneu5 46 93 IPR000315 GO:0008270
Cmo02g00244 462 SMART bboxneu5 94 136 IPR000315 GO:0008270
Cmo02g00244 462 ProSiteProfiles Zinc finger B-box type profile. 89 136 IPR000315 GO:0008270
Cmo02g00244 462 CDD Bbox1_BBX-like 93 136 - -
Cmo02g00244 462 CDD Bbox1_BBX-like 51 93 - -
Cmo02g00244 462 Pfam CCT motif 405 447 IPR010402 GO:0005515
Cmo02g00244 462 ProSiteProfiles Zinc finger B-box type profile. 46 93 IPR000315 GO:0008270
Cmo02g00244 462 ProSiteProfiles CCT domain profile. 405 447 IPR010402 GO:0005515
Cmo02g00244 462 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 47 461 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00244 Cmo19g00853 CCT
Cmo02g00244 Cmo20g00608 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00244 Cmo-Chr2:1142560 Cmo11g01818 Cmo-Chr11:12734629 1.97E-164 dispersed
Cmo02g00244 Cmo-Chr2:1142560 Cmo20g00696 Cmo-Chr20:3448685 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9208 PF06203 CCT 3.30E-15 CL0281 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00244 - - cmos:111451690 919.457