Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00244 ATGCTCCCCAAATGGAAGTTTTTGCTCTGTTTTCTTTTTTCCTTTCAAGGAAGAAATTCAACACATTTGGCAGTGCTTGGATTTGATAAGAGCTCTGATAATCTGAGCTCAGAGAGATTTGAAAATTCATTTGGAAAGATGGGTGTTATGTGTGATTTTTGTGGGGATCAAAGGGCAATGGTTTTCTGTCGATCTGATGTTGCTTGTTTGTGCTTATCTTGTGATCGTAATGTTCATTCGGCTAACGCCTTGTCGAGGCGTCATACAAGAACGCTGTTATGTGAGAGATGCCATTTGCAACCTGCCTCAGTAAGATGTATTGATGAGAGGGTTTCTCTGTGTCAAAATTGTGACTGGACGGGTCATGGCACGTCTACGACTTCATCATCGCACAAGAGGCAAGCTATCAATTGTTACTCTGGTTGTCCATCAGCTGCTGAGCTTTCTTCCATCTGGTCCTTTGTTTTGGAGGTTCCCTCTGTGAATGATGCTTGTGAGACAGAGATGGGATTGATGAGCATTTCTGAGACCAACTTGACGGGAGCTTGGTGCCCTTCGGAGAATAACGACGCCTGTCGAAGAATGCTCGGGTCGACTGAAGCCAGAGATGTTTGCAGCAGGGACAAATCAAATGTTTTGGTTGGATCATCTTCACTCTCTGACTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTAATATGGCTGTACCCAAGTTTTGCTGTCCTGGAACGAAACTTCCCGGATTCTGTGGCGACGATGACGACGACATCTACAAGGAGTTTGACATGGATGAAATGGATTTGAATCTCGAAAATTACGAGGAGCTATTTGGTATGAGCCTTAATCATTCTGAAGATCTTTTCGAGAACGGTGGAATCGATAGCCTTTTCGAGGCCAAAGGCTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGCTCTCCTGTTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCTGACTCGGTTATGAGTACTAAAACCGAACCGATTCTCTGTTTTAATTCAAGGCAAGCATCGGGTGTGTCGTTTTCTGGCGTTACGGGTGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCTTCTTCCATGCTTCTAATGGGAGAGCCTCCTCCTTGGTGTGCTCCTGGCACTGAAAGTTCGATCCCGTCTTCTGATCGTAACAATGCCGTTCTACGTTACAAGGAGAAAAAGAAGACGCGCAAATTTGAGAAACGAGTAAGATACGCAACACGCAAAGCTCGAGCCGATGTGAGAAGGCGAGTGAAGGGACGCTTTGTGAAGGTCGGAGAGGCGTATGATTACGACCCGTTGAGCCAGACTAGAAGCTGCTGA 1389 46.36 MLPKWKFLLCFLFSFQGRNSTHLAVLGFDKSSDNLSSERFENSFGKMGVMCDFCGDQRAMVFCRSDVACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPASVRCIDERVSLCQNCDWTGHGTSTTSSSHKRQAINCYSGCPSAAELSSIWSFVLEVPSVNDACETEMGLMSISETNLTGAWCPSENNDACRRMLGSTEARDVCSRDKSNVLVGSSSLSDFGSRPHTSDQPVELANMAVPKFCCPGTKLPGFCGDDDDDIYKEFDMDEMDLNLENYEELFGMSLNHSEDLFENGGIDSLFEAKGFEDSVCHSAVAAEGSPVGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQASGVSFSGVTGESSAGDYQDCGASSMLLMGEPPPWCAPGTESSIPSSDRNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKVGEAYDYDPLSQTRSC 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1142560 1146601 - CmoCh02G002440.1 Cmo02g00244 375841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00244 462 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 47 461 - -
Cmo02g00244 462 Pfam B-box zinc finger 50 91 IPR000315 GO:0008270
Cmo02g00244 462 SMART bboxneu5 46 93 IPR000315 GO:0008270
Cmo02g00244 462 SMART bboxneu5 94 136 IPR000315 GO:0008270
Cmo02g00244 462 ProSiteProfiles Zinc finger B-box type profile. 89 136 IPR000315 GO:0008270
Cmo02g00244 462 CDD Bbox1_BBX-like 93 136 - -
Cmo02g00244 462 CDD Bbox1_BBX-like 51 93 - -
Cmo02g00244 462 Pfam CCT motif 405 447 IPR010402 GO:0005515
Cmo02g00244 462 ProSiteProfiles Zinc finger B-box type profile. 46 93 IPR000315 GO:0008270
Cmo02g00244 462 ProSiteProfiles CCT domain profile. 405 447 IPR010402 GO:0005515
Cmo02g00244 462 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 47 461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00244 - - - cmos:111451690 919.457
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00244 Cmo19g00853 CCT
Cmo02g00244 Cmo20g00608 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00244 Cmo-Chr2:1142560 Cmo11g01818 Cmo-Chr11:12734629 1.97E-164 dispersed
Cmo02g00244 Cmo-Chr2:1142560 Cmo20g00696 Cmo-Chr20:3448685 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g541 Blo02g00107 . . Bda13g00629 . Bpe15g00764 . . . . Cma02g00242 Cma20g00636 Car02g00129 Car20g00602 . . . . . . . . . . . . . . . . . Cone3ag1271 . Cone8ag1452 Cone12ag1396 . . Chy11g00733 . . . . . Bpe14g00696 . Bma02g01294 . . Cmo02g00244 Cmo20g00608 . . . . Cpe16g00362 Cpe05g01383 Bhi10g01471 . . . Hepe08g0483 . . Cla02g00819 Cam02g0985 Cec02g0874 Cco02g0903 Clacu02g0865 Cmu02g0856 Cre02g1172 . . . Cme11g00764
Vvi12g737 . Blo15g00433 . . Bpe12g00169 Bpe15g00764 Bma03g00658 Bma08g00690 . Cmo19g00853 Cma02g00242 Cma20g00703 . . . Cpe15g00673 Cpe04g00659 Bhi05g01505 . . Lac12g0415 Hepe02g0327 . . Cla02g00307 Cam02g0316 Cec02g0317 Cco02g0319 Clacu02g0307 Cmu02g0306 Cre02g0639 Cone3ag1271 . Cone8ag1358 Cone12ag1303 . Csa07g00235 Chy11g00733 Cme01g00573 . Blo13g00448 Bda14g00661 . . Bpe07g00668 Bma02g01294 Bma12g00873 . Cmo02g00244 . . Cma19g00837 Car11g01444 Car19g00649 . Cpe05g01383 Bhi10g01288 . . . Hepe08g0372 . . . . . . . . . Lsi11g01330 Csa06g00975 Chy01g00545 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00329 CST 6 323 C2C2-CO-like Transcription Factor Family AT5G15850 51.1 2.6e-42 170.2
Cmo12g00329 CST 4 332 C2C2-CO-like Transcription Factor Family AT3G02380 50.7 1.4e-40 164.5
Cmo05g00340 CST 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 4.1e-83 305.8
Cmo12g00329 CST 1 329 C2C2-CO-like Transcription Factor Family AT5G24930 59.4 2.4e-75 280.0
Cmo11g00414 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.9e-56 217.2
Cmo10g00449 CCT,CST 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 9.5e-56 214.9
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 56.0 2.0e-93 340.1
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT3G07650 55.4 5.1e-89 325.5
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 8.2e-87 318.2
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.2 4.1e-86 315.8
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 7.5e-88 321.6
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 2.2e-87 320.1
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.7e-84 310.5
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 6.5e-84 308.5
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 7.5e-88 321.6
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 2.2e-87 320.1
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.7e-84 310.5
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 6.5e-84 308.5
Cmo11g01107 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.6 1.2e-52 204.5
Cmo01g02006 CCT,ECH 1 196 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 2.9e-51 199.9
Cmo20g00825 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 51.2 1.8e-45 180.6
Cmo04g00707 CST 1 276 C2C2-CO-like Transcription Factor Family AT1G78600 50.2 1.8e-74 276.9
Cmo04g00794 CCT,ECH 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 3.8e-55 211.8
Cmo07g00440 CCT,CST,ECH 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 7.0e-49 191.0
Cmo03g00728 CCT,CST,ECH 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 1.0e-47 187.2
Cmo16g00660 . 1 97 C2C2-CO-like Transcription Factor Family AT2G21320 81.4 5.0e-39 158.3
Cmo04g00794 CCT,ECH 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.4 2.8e-56 215.7
Cmo07g00440 CCT,CST,ECH 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 68.2 4.2e-52 201.8
Cmo03g00728 CCT,CST,ECH 1 168 C2C2-CO-like Transcription Factor Family AT4G38960 60.1 2.8e-48 189.1
Cmo16g00660 . 1 97 C2C2-CO-like Transcription Factor Family AT4G38960 81.4 2.2e-40 162.9
Cmo11g01107 . 1 233 C2C2-CO-like Transcription Factor Family AT4G39070 53.8 4.6e-54 208.8
Cmo12g00380 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.5e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9208 PF06203 CCT 3.30E-15 CL0281 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00244 Cmo_Chr02 FPKM 15.368189 18.432453 15.662142 14.956212 20.070713 18.394392 23.248587 17.595459 16.446264 18.377056