Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00247 ATGGCCGCCTCTGAAGAACCCAACGCCGCCGCTTCCCTTCACGGCTCCTCATCGGCTTCTCAGCCCCTTCTCTCAAACCCCTCTCCTCCGCCGCTTCTATACCCTTATCCCACCATTGACGACCCACCACAGAGCAATCCCTCCGAATCCGACCCTTCTCAGTACCTTCAAATTTCCTACAACTACGGCCACCGGCCTTTCAAGGACATACCCATCCTTGTTCTTTTCATTCTCTTCGTTTTATCCTCTTTTGGGTTTGGGATTTTCGCCACTTTCAATCGAAATATCAATTACTCTAACCTCTCCTCCTATTACTATGATGAGAAAACCTCCAATTGTGTCACGGACTCTGTTTTTTCTTCATCCCCCATTTTGGTTTTTCTCTACTCTTTCTCCTCTTCTTCCTCTGTTTTGAAATCCTTGATTTGGACCCTTGTAGCTACTTTGATTTTGAGCTTACCCATTTGCTTCTTTTTACTTCTCTTGCTTAAGCACTACACGAGGCAGATTGTATACGCCTCACTTCCTTTCTTCGTTCTTGTTCCTATTTTCATCAATGTCTATTGGTTCATTGCCTGTACGGTTAACCCCACTTGCAGCTACAACTTCCCTATGGTTTACAGAATTTTAGTTCTGATCTTCATGTTCTTGGTGATTGGGGTAATCGTGTGGATATTTATCGTTAATTGGCATCGAATTGGGCTCACCATTAGTATAATTGGGGTTGCCTCGGATGCATTGTCTATGAATCTGGGTTTGCTTGTGGTTATACCGAGTATGACACTGGGGCTACTGATTTATTATGCACCAATTGTTCTGTTCTTGGTGTTTGCGAGGTTGAATGGGAAAATTGTGCCCCATCACCATGGATCGAGTGGAGACTATACTTGTGTTTGGAAGCAAGATAAGTGGGTACCTGCTTATTATGCATTGGCTATTCTTACGATGTTGTGGTCTGGTGCTGTAATGGTTGAAGGACAAGTTTATGTGATTAGTGGTACCATTTCGCAGTGGTATTTCTCGAAAGAAGAGGATGACACTCCAAGACGGAGCATTCGAAAGTCTTTAAGGAATGCATTTGGTCCCTCTGCTGGCACTGTATGTTTATCTGGGTTACTAATTCTTGTGGTGCGTGTCGTTCGTGCTATGGTCGATAGTGCACGACAAGAAGATACTCCTGGGGTGTTCAAGATCATTTTACGTTGCTGCGTAAATACATTTCTGGCAGCTGTCGATTATCTGAACAAATTCACAATAACTTTTGCAGCAATAACTGGTGAAGCTTACTGCTCGTCTGCAAGAATGACATACGAACTCTTAAAACGAAACCTCCTTTCGACTGTCTTCGTCGAAACAATCTCCACACGTTTATTACTTGGAATCGCCTTTGTCCTCTCAACCATATACGCAATTGTGGCTTGTGCTATCTTACGAGCTGTGAGCCATCTTGGGGCCGATACGTACCTTGTGGCTTTTGCAGCATGGCTGCTCCTGATCGTGATACTCGAATTCTTTATCCACGTGTTGGATAATGTGATCGAAACTGTTTACGTGTGCTATGCCATTGATCGGGACAGAGGTGAAGTGTGCAAACAAGATGTTCATGAGGCGACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAATTCGTTCATGGAAATGAAATGGAAGAAGGTGCATAGGTATATTGTTTTTAAGATCGATGAAGGATCGAGGTTGGTTACTGTTGACAAGGTCGGCGGTTCGGCAGAAAGCTACGATGATCTCACCGCCTCATTGCCGACCGACGACTGTCGGTATGCTGTGTTCGATTTCGACTTCGTCACCATTGATAATTGCCGGAAGAGCAAGATCTTCTTCATCGCCTGGTCACCGACCGCATCAAGAATTAGAGCAAAAATTCTATACGCAACTTCAAAAGCTGGACTGAGGAGAGTGCTGGAAGGTATACATTACGAGGTCCAAGCAACCGATCCAACTGAGATGGGGATCGATGTGATCAAGGACAGAGCCAAATAG 2019 44.77 MAASEEPNAAASLHGSSSASQPLLSNPSPPPLLYPYPTIDDPPQSNPSESDPSQYLQISYNYGHRPFKDIPILVLFILFVLSSFGFGIFATFNRNINYSNLSSYYYDEKTSNCVTDSVFSSSPILVFLYSFSSSSSVLKSLIWTLVATLILSLPICFFLLLLLKHYTRQIVYASLPFFVLVPIFINVYWFIACTVNPTCSYNFPMVYRILVLIFMFLVIGVIVWIFIVNWHRIGLTISIIGVASDALSMNLGLLVVIPSMTLGLLIYYAPIVLFLVFARLNGKIVPHHHGSSGDYTCVWKQDKWVPAYYALAILTMLWSGAVMVEGQVYVISGTISQWYFSKEEDDTPRRSIRKSLRNAFGPSAGTVCLSGLLILVVRVVRAMVDSARQEDTPGVFKIILRCCVNTFLAAVDYLNKFTITFAAITGEAYCSSARMTYELLKRNLLSTVFVETISTRLLLGIAFVLSTIYAIVACAILRAVSHLGADTYLVAFAAWLLLIVILEFFIHVLDNVIETVYVCYAIDRDRGEVCKQDVHEATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGSAESYDDLTASLPTDDCRYAVFDFDFVTIDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEGIHYEVQATDPTEMGIDVIKDRAK 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1162122 1170407 + CmoCh02G002470.1 Cmo02g00247 375844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00247 672 PANTHER ACTIN DEPOLYMERIZING FACTOR 5-RELATED 521 672 - -
Cmo02g00247 672 MobiDBLite consensus disorder prediction 1 52 - -
Cmo02g00247 672 CDD ADF_cofilin_like 539 671 IPR017904 GO:0015629|GO:0030042
Cmo02g00247 672 PANTHER COFILIN-RELATED 521 672 IPR017904 GO:0015629|GO:0030042
Cmo02g00247 672 MobiDBLite consensus disorder prediction 24 42 - -
Cmo02g00247 672 Pfam Cofilin/tropomyosin-type actin-binding protein 547 669 IPR002108 GO:0003779
Cmo02g00247 672 ProSiteProfiles ADF-H domain profile. 540 672 IPR002108 GO:0003779
Cmo02g00247 672 Pfam Plasma-membrane choline transporter 213 525 IPR007603 GO:0022857|GO:0055085
Cmo02g00247 672 Gene3D Severin 529 672 IPR029006 -
Cmo02g00247 672 SUPERFAMILY Actin depolymerizing proteins 536 670 - -
Cmo02g00247 672 SMART adf_2 545 672 IPR002108 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00247 - - - csv:101217219 861.677
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00247 Cmo20g00754 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00247 Cmo-Chr2:1162122 Cmo02g01791 Cmo-Chr2:10192620 1.51E-59 dispersed
Cmo18g01051 Cmo-Chr18:11180234 Cmo02g00247 Cmo-Chr2:1162122 7.34E-09 dispersed
Cmo20g00755 Cmo-Chr20:3796624 Cmo02g00247 Cmo-Chr2:1162122 0 transposed
Cmo02g00247 Cmo-Chr2:1162122 Cmo20g00754 Cmo-Chr20:3792216 7.39E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g144 . . . . . . . . . . Cma02g00246 Cma20g00758 . Car20g00659 . . . . . . . . . . . . . . . . . Cone12ag1226 . . . Lsi10g00487 . . . . . . . . . . . Sed01g0206 Cmo02g00247 Cmo20g00754 . . . . . . Bhi10g01861 Tan05g1152 Cmetu11g1192 . Hepe08g0285 . . Cla02g01159 Cam02g1235 Cec02g1244 Cco02g1284 Clacu02g1216 Cmu02g1185 Cre02g1496 . Csa02g01382 . Cme11g00388
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005973 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00247 Cmo_Chr02 FPKM 1.106667 1.197121 1.776163 2.49744 3.47482 2.565793 2.807349 0.09214 0.104114 0.027423