Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00253 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCAGCCCCTTCTTCTTCGTCTTCTGGTCCTACTACTCGTTCTAGCAAGCGCGCTCGTCTCTCTGGTACTTCCTCATTGAATCTTGCTGCACCTACTCTTTCGATCTCAACGCGTTCTCGCTCTACTCGAACCCAAGAACCGTCTGCCACCAGTACTCCAATGGACTCCACCAATGAATCATCGGGGTCACGCCGTCGAGGGAAGAACTCTGATAAAGAAAATTCGGATAAGGGGAAGGAGAAAGAACATGAGGTTAGAATTGGGGATAGAGAAAAAAATGCGGAGCAAAGCTTTGGGCTAAATATTGAAGGCAGTGGCGGTGGAGAGGATGACGATAACGACAGTGAAGGAGGGATGGGAGTCTTGCAGCATAATTTATCCACGGCAAGTAGCGCCCTTCAAGGACTTTTGAGGAAACTCGGTGCTGGACTGGATGATTTACTTCCTTCTTCTGCAATTGCATCGGCTTCTTCCTCACAGCAGAGAGGACGGCTTAAGAAGATCTTGTCTGGGTTGAGAGCCGATGGAGAAGAAGGGAGGCAAGTTGAGGCATTGACACAACTTTGTGAGATGCTCTCAATCGGCACCGAGGAATCTCTAAGTACTTTCTCTGTAGATTCCTTTGTCCCTGTCCTTGTCGGGTTACTTAATCACGAAAGCAATCCGGATATAATGCTTCTAGCGGCCAGGGCTCTAACCCATCTGTGTGATGTCCTGCCTTCATCGTGTGCTGCTGTCGTTCATTATGGTGCTGTTTCCTGCTTCTGTGCGAGATTGCTAACTATAGAATACATGGACTTAGCTGAACAGTCACTGCAAGCTTTGAAGAAGATATCCCAGGAACACCCTACTGCCTGCCTGCGTGCTGGTGCTCTTATGGCTGTGCTTTCATATTTAGATTTCTTCTCCACAGGAGTCCAGCGAGTCGCATTGTCAACTGCTGCTAATATGTGCAAGAAGCTTCCTTCCGATGCAGCCGACTTTGTGATGGAAGCTGTTCCCCTGCTAACCAACCTTCTTCAGTATCATGATGCAAAGGTGTTGGAGCATGCTTCTGTTTGTTTGACCCGTATTGCCGAGGCCTTTGCATCATCTCCTGATAAATTAGATGAACTATGTAATCATGGACTTGTTACGCAAGCTGCTTCACTTATTTCCACTAGTAGCACCGGAGGTGGACAGTCAAGTCTCAGCTCAGCAACTTATACTGGATTAATCCGACTTCTTTCCACTTGTGCAAGTGGGTCTGCCTTAGGTGCAAAAACTTTGCTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTGTCTGGTTCTGGTGTGTCTACCAATTCGCCTGCATTAAATAGACCACAAGAGCAGATTTTTGAGATAGTCAACTTGGCAAATGAGCTTCTACCCCCTCTGCCTCAAGGAACCATTACTTTTCCGCCCAACTTTAATTCGTTTGTGAAAGGACCTGTCGTCAAGAAGCCTTCTACTAGTGGTTCTGTGAAAGATGAAGATCCAACTGATGGTGCCCCTGAGGTTTCAGCTCGTGAGAAACTCTTAAAGGATCAGCCTGAGCTCCTACATCAGTTTGGAATGGATCTCCTTCCTATTTTAATACAGATCTATGGGTCCAGTGTGAATGGTCCAGTACGTCATAAATGTCTCTCAGGAATTGGAAAATTGATGTATTTCAGCACTCCAGAGATGATACAATCGCTATTGAATGTGACTAATATAGCAAGTTTTCTAGCGGGTGTTTTGGCGTGGAAAGATCCACACATATTGATTCCTGCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCCTGAAACATTTTCCAAGATGTTTCTTCGAGAGGGTGTTGTTTATGCTGTTGACCAGCTTATCTTAGCCGATAACCAAAATTCTGCTTCCCAAGCTGCTTCTGTTGAGAAGAATAATAACTCTGCATCTGGAACTTCATCACGCACTCGGCGTTATAGAAGGCGCAGTGGAAATATGAATCCGGATGGAAGTTCACTGGATGAAAACAAGAATCCTGTTTCTGGTAGTGGTGTTCCACAGGGTTCGGTGGAGGCTCCATCAGTTAATTCTAATCTCCGAACTGCTGTGAGCGCGTATGCCAATGCTTTTAAAACCAAGTACTTCCCTTTAGATCCGGGAGATGTTGAAGTTGGAGTTACGGATGATCTCTTACGTCTGAAAAATCTGTGTGTCAAGTTGAGTACTGGTATTGATGATCAGAAGACTAAATCAAAAGGGAAGTCAAAAGCTTCAGGGTCTCGCCAAGATGATATTATTACTAATAAGGAAGAGTGTTTAACTGGTGTAATATCTGAAATGCTAATTGAATTGGGAAAAGATGATGGTGTTTCTACTTTTGAATTTATTGGTAGTGGCGTTGTTGGAGTTCTGCTTAACTACTTTTCTTGCGGATACTTCTCTAAAGGAAGAATTTCGGAAGCTGAGTTGCCAAAGCTTCGGCGACAAGTACTTAAAAGATTTAAATCATTTATTTCTGTTGCCCTTCCTACAAGCATTAATGTGGGGACAGTAGCTCCTATGACAGTCTTAGTTCAAAAGCTACAGAGTGCTTTGTCCTCTTTGGAGCGTTTTCCCGTTGTCTTGAGCCATTCTTCTAGATCATCCAATGGTAGTGCACGTCTTTCCTCTGGGCTAAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCACAAGGAGAAAAATCACTTCGTGATTATTCATCAAATATTGTTCTGATTGATCCATTGGCAAGTTTAGCAGCTGTCGAAGAATTTCTGTGGCCTAGAGTTCAGAGAAGTGAATCTGGTCAAAAACCTTCAGCATCATCTGCTGCAAACTCAGATTCAGGAACAACCCCTACAGGAGCTGTTGCTTCAACTCCTAGTTCAACCACTCGCCGTTACCCTACTAGGCACAGATGGTCGATGGCTATTGGAGAAAGAGCAGGGAAGGAATCTTCACAGGAGAAAAACACTTCAAAGGGGAAGGGGAAAGCTATTCTAAAGCCTGCTTGGGAGGAGAAGAGAGGCCTACAAACTAGAAATTCTACCCGTAGAAGATCAGCTGTGAACAAGGATGCCCAAATGAAGCCTGCAAATGGAGAGACCACTTCTGAGGATGAAGAACTGGACCTGTCCTCCATCCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGATGATGACCAAGATGATGTGCTGCAGGAAGACTCTCTTCCTGTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGTGACGCAGTTGAAGATGGTGATGCTGGTCCAGCTACAAGTGATAGCCAGATTCATTCAGCTTTTGGCTCTGGCAGTAGAGCAGCTGCAGTCAGGGGTTCAAGGGGAGGTATGTCATTTGCTGCTGCTGCTATGGCTGGGCTTGGATCAGCTAATGGCAGGGCTTTCCATGGAAGTCGGGATCAACAGGGACGTCCTCTCTTTGGTGGCTCCAATGATGACCCAAAATTAGTCTTTTCTTCTGGTGAGAAGCAGCTTGATAGACATTTGACAATATATCAAGCTGTTCAACGGCAGCTTGTATTGAACGAGGATGATGATGAGAGGTTTGCTGGTACTGGCAGTGACTTCTTATCTAATGATGGGAGCGGTTTATGGGGTGATATATATACCATCACATATCAGAGGTCAGATAATCAATGCGAGAGGGCTTTAGCTGGGGAATCAAGCTCCTCTAAATCTAAATCTACCAAATGTGTATCAACTTCCAGTTCAATTTCAGAGTCTCAGTTCCATCAAATGTCACTTCTAGACAGTATTTTACAAGGAAAACTTCCATGTGATTTGGACAAATCTAATCCTACATATGATATATTATCTTTACTGCGTGTACTCGAGGGATTGAATCAGCTTGCTCCACGCTTAAGGGCACAAATAGTCTCTGATCATTTTGCAGAGGGAAAGATCTCTACACTTAATGAGTTGGGTGGAATTGGTGGAAAGGTTCCTCATGAGGAATTCATCAATAGTAAGCTTACTCCCAAATTGGCTCGACAAATTCAGGATGCTCTTGCATTATGCAGTGGGAGCCTCCCTTCGTGGTGTTACCAATTGACTAAGGCATGTCCATTCTTGTTTCCTTTTGAGACCCGGCGACAGTATTTCTATTCCACTGCATTTGGGCTGTCACGTGCATTATATCGGCTACATCAGCAACAAGGAGCTGATGGTCAAGGAACAGTAAATGAGCGAGAGGTAAGGGTTGGAAGATTGCAGCGCCAAAAAGTTCGTGTCTCACGTAATCGAATATTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAGGCCGTCCTTGAAGTAGAATATTTTGGCGAAGTGGGAACTGGATTAGGTCCTACCCTTGAATTCTACACACTTTTAAGTCATGAGTTGCAGAGGGCTGGACTTGGGATGTGGAGGTCTAATTCTTTACAAGAGTCGATCGAAAGTAGTGAAGATGAGCAGCTTGGAAAGGCTAAAGATGCCAATATTGATATCATCCAATCTCCTCTTGGGTTATTCCCACGACCTTGGCCACCAAATGCCAATTCTTCCGAGGGCAGCCAATTTTCGAAGGTTATTGAATATTTCCGGCTTGTTGGTCGTGCGATGGCGAAAGGTCTGCAAGATGGAAGACTATTGGATCTACCACTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTACATGATGTCCTCTCATTTGACGCTGAGCTAGGGAAGAATTTACAAGAATTGCAGGCTCTTGTTCGTCGGAAACATCTTTTAGAATCGACGAACGGTGATAATGAAAATACAATTTCCAACTTGTCCTTCCGCGGGGTTGCAGTAGAAGATCTCTCCTTGGATTTTACACTACCTGGTTATCCGGACTATGTTTTGAAGCCAGGAGATGAAACTGTTAATATTCACAACTTGGAGGAGTACATATCCCTTGTATTAGATGCCACTGTTAAGACTGGCATAATGCGACAAATGGAAGCATTTACTGCAGGATTCAATCAGGTTTTTGACATATCGGCATTACGCATATTTATTCCCCACGAGTTGGACCATTTGCTATGTGGTCGTAGAGAATTGTGGAAGGCTGACACTCTTGCCGATCATATTAAATTCGATCACGGATACACCGCCAAGAGTCCTGCAATAGTCAATTTTCTCGAGATTATGGGCGAATTCACACCAGAGCAGCAGCGAGCTTTCTGCCAGTTTGTAACAGGTGCACCTAGACTTCCACCAGGAGGCCTTGCAGTGTTGAACCCAAAATTGACTATTGTGAGAAAGCACTCGTCAACAGCGACTAATGCAGCCACCAGCGGGGTAGGGGCTTCCGAATCAGCAGATGACGATTTGCCTAGTGTTATGACGTGCGCCAATTACCTTAAGCTTCCTCCGTATTCAACCAAGGAAATAATGTACAAGAAACTAATCTATGCGATCAACGAGGGGCAGGGATCTTTCGATTTGTCATGA 5589 44.39 METRSRKRAEASSAAPSSSSSGPTTRSSKRARLSGTSSLNLAAPTLSISTRSRSTRTQEPSATSTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDREKNAEQSFGLNIEGSGGGEDDDNDSEGGMGVLQHNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSSLSSATYTGLIRLLSTCASGSALGAKTLLLLGISGILKDILSGSGVSTNSPALNRPQEQIFEIVNLANELLPPLPQGTITFPPNFNSFVKGPVVKKPSTSGSVKDEDPTDGAPEVSAREKLLKDQPELLHQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPALQIAEILMEKLPETFSKMFLREGVVYAVDQLILADNQNSASQAASVEKNNNSASGTSSRTRRYRRRSGNMNPDGSSLDENKNPVSGSGVPQGSVEAPSVNSNLRTAVSAYANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCVKLSTGIDDQKTKSKGKSKASGSRQDDIITNKEECLTGVISEMLIELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSKGRISEAELPKLRRQVLKRFKSFISVALPTSINVGTVAPMTVLVQKLQSALSSLERFPVVLSHSSRSSNGSARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFLWPRVQRSESGQKPSASSAANSDSGTTPTGAVASTPSSTTRRYPTRHRWSMAIGERAGKESSQEKNTSKGKGKAILKPAWEEKRGLQTRNSTRRRSAVNKDAQMKPANGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDQDDVLQEDSLPVCMPEKVHDVKLGDAVEDGDAGPATSDSQIHSAFGSGSRAAAVRGSRGGMSFAAAAMAGLGSANGRAFHGSRDQQGRPLFGGSNDDPKLVFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGTGSDFLSNDGSGLWGDIYTITYQRSDNQCERALAGESSSSKSKSTKCVSTSSSISESQFHQMSLLDSILQGKLPCDLDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDHFAEGKISTLNELGGIGGKVPHEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQQGADGQGTVNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESIESSEDEQLGKAKDANIDIIQSPLGLFPRPWPPNANSSEGSQFSKVIEYFRLVGRAMAKGLQDGRLLDLPLSTAFYKLVLGQDLDLHDVLSFDAELGKNLQELQALVRRKHLLESTNGDNENTISNLSFRGVAVEDLSLDFTLPGYPDYVLKPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTAGFNQVFDISALRIFIPHELDHLLCGRRELWKADTLADHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTATNAATSGVGASESADDDLPSVMTCANYLKLPPYSTKEIMYKKLIYAINEGQGSFDLS 1862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1202717 1213685 + CmoCh02G002530.1 Cmo02g00253 375850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00253 1862 MobiDBLite consensus disorder prediction 74 106 - -
Cmo02g00253 1862 SUPERFAMILY ARM repeat 177 643 IPR016024 -
Cmo02g00253 1862 Gene3D Hect, E3 ligase catalytic domain 1733 1860 - -
Cmo02g00253 1862 Gene3D - 179 657 IPR011989 -
Cmo02g00253 1862 ProSiteProfiles HECT domain profile. 1470 1862 IPR000569 GO:0004842
Cmo02g00253 1862 Pfam HECT-domain (ubiquitin-transferase) 1493 1862 IPR000569 GO:0004842
Cmo02g00253 1862 MobiDBLite consensus disorder prediction 1 134 - -
Cmo02g00253 1862 Gene3D Hect, E3 ligase catalytic domains 1386 1629 - -
Cmo02g00253 1862 MobiDBLite consensus disorder prediction 651 706 - -
Cmo02g00253 1862 MobiDBLite consensus disorder prediction 677 706 - -
Cmo02g00253 1862 CDD HECTc 1446 1857 IPR000569 GO:0004842
Cmo02g00253 1862 SUPERFAMILY Hect, E3 ligase catalytic domain 1438 1855 IPR035983 GO:0004842
Cmo02g00253 1862 MobiDBLite consensus disorder prediction 1059 1092 - -
Cmo02g00253 1862 MobiDBLite consensus disorder prediction 10 73 - -
Cmo02g00253 1862 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 49 1862 IPR045322 GO:0006511|GO:0061630
Cmo02g00253 1862 MobiDBLite consensus disorder prediction 651 666 - -
Cmo02g00253 1862 MobiDBLite consensus disorder prediction 994 1046 - -
Cmo02g00253 1862 MobiDBLite consensus disorder prediction 1115 1135 - -
Cmo02g00253 1862 MobiDBLite consensus disorder prediction 954 1092 - -
Cmo02g00253 1862 MobiDBLite consensus disorder prediction 954 991 - -
Cmo02g00253 1862 SMART arm_5 209 250 IPR000225 GO:0005515
Cmo02g00253 1862 SMART arm_5 292 332 IPR000225 GO:0005515
Cmo02g00253 1862 SMART arm_5 335 373 IPR000225 GO:0005515
Cmo02g00253 1862 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 49 1862 - -
Cmo02g00253 1862 SMART hect_3 1457 1862 IPR000569 GO:0004842
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00253 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - csv:101218793 3112.78
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00253 Cmo20g00750 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00253 Cmo-Chr2:1202717 Cmo06g00347 Cmo-Chr6:1678681 4.79E-128 dispersed
Cmo16g00998 Cmo-Chr16:6871815 Cmo02g00253 Cmo-Chr2:1202717 1.08E-33 wgd
Cmo02g00253 Cmo-Chr2:1202717 Cmo20g00750 Cmo-Chr20:3750324 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00253 Cmo_Chr02 FPKM 19.511456 22.779385 10.259458 10.840738 14.932927 13.079422 15.970043 10.496011 10.654536 11.016088