Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00254 ATGAGTGTTTCCAGGTTTATTAAGTGTGTTACCGTTGGCGATGGTGCTGTTGGGAAGACTTGTATGCTTATCTCCTACACCAGCAACACTTTCCCCACCGATTACGTGCCGACCGTTTTCGACAATTTTAGTGCAAATGTAGTTGTGGATGGCAGTACTGTCAACCTGGGCTTGTGGGATACTGCTGGTATGTTCAAAACAAGTCTTTACATAACATGTTTTCTTGCTGAAAGTCTGATGTGTATGAGTCATGAACCAGGCCAGGAAGATTACAATAGGTTGAGACCGTTGAGCTACCGTGGAGCCGATGTATTTCTCTTAGCGTTCTCGCTCATAAGCAAGGCTAGCTATGAAAATGTGGCTAAGAAATGGATTCCTGAACTGAGGCACTATGCTCCTGGTGTACCAGTTATTCTTGTTGGGACTAAGCTTGATCTTCGAGAAGATAAACAGTACCTGATCGAACACCCGGGGGTAGTCCCCATTACCACGTCCCAGTTTTGTTCATCATCAACGGTTCGATTTGAACGCTTCTTGCAGGGGGAGGAACTCAGAAAACTAATCGGTGCCCCAGTTTACATCGAATGCAGTTCGAAAACACAGCAAAATGTGAAAGCCGTGTTCGATGCAGCGATCAAAGTGGTTCTCCAGCCTCCAAAGCGGAAGAAGCGAAAGAAGCGAAAGGCACAGAAGTCGTGTTCTATATTATGA 711 45.57 MSVSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGMFKTSLYITCFLAESLMCMSHEPGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPVILVGTKLDLREDKQYLIEHPGVVPITTSQFCSSSTVRFERFLQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKRKKRKKRKAQKSCSIL 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1220171 1223823 + CmoCh02G002540.1 Cmo02g00254 375851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00254 236 ProSiteProfiles small GTPase Ras family profile. 2 236 IPR001806 GO:0003924|GO:0005525
Cmo02g00254 236 SMART rab_sub_5 7 218 - -
Cmo02g00254 236 SMART ras_sub_4 4 218 - -
Cmo02g00254 236 PRINTS Transforming protein P21 ras signature 30 46 - -
Cmo02g00254 236 PRINTS Transforming protein P21 ras signature 193 215 - -
Cmo02g00254 236 PRINTS Transforming protein P21 ras signature 7 28 - -
Cmo02g00254 236 PRINTS Transforming protein P21 ras signature 133 146 - -
Cmo02g00254 236 PRINTS Transforming protein P21 ras signature 47 69 - -
Cmo02g00254 236 Pfam Ras family 8 64 IPR001806 GO:0003924|GO:0005525
Cmo02g00254 236 Pfam Ras family 87 216 IPR001806 GO:0003924|GO:0005525
Cmo02g00254 236 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 85 236 - -
Cmo02g00254 236 CDD Rop_like 6 216 - -
Cmo02g00254 236 PANTHER RHO FAMILY GTPASE 85 236 IPR003578 GO:0005525|GO:0007264
Cmo02g00254 236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 216 IPR027417 -
Cmo02g00254 236 ProSiteProfiles small GTPase Rab1 family profile. 2 236 - -
Cmo02g00254 236 SMART rho_sub_3 9 218 IPR001806 GO:0003924|GO:0005525
Cmo02g00254 236 ProSiteProfiles small GTPase Rho family profile. 1 215 - -
Cmo02g00254 236 PANTHER RHO FAMILY GTPASE 1 64 IPR003578 GO:0005525|GO:0007264
Cmo02g00254 236 TIGRFAM small_GTP: small GTP-binding protein domain 7 65 IPR005225 GO:0005525
Cmo02g00254 236 TIGRFAM small_GTP: small GTP-binding protein domain 86 150 IPR005225 GO:0005525
Cmo02g00254 236 Gene3D - 2 236 IPR027417 -
Cmo02g00254 236 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00254 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - csv:101219263 341.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00254 Cmo-Chr2:1220171 Cmo12g00350 Cmo-Chr12:2165845 4.80E-114 dispersed
Cmo14g01973 Cmo-Chr14:14544168 Cmo02g00254 Cmo-Chr2:1220171 1.67E-89 dispersed
Cmo02g00254 Cmo-Chr2:1220171 Cmo06g00115 Cmo-Chr6:655694 5.73E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g158 . . . . . . Bma05g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00494 . Chy11g00256 . . . . . . Bpe05g00288 . . Sed01g0196 Cmo02g00254 . . . . . . Cpe05g01373 Bhi10g01852 Tan05g1137 Cmetu11g1470 . Hepe08g0292 . . Cla02g01166 Cam02g1244 Cec02g1253 Cco02g1294 Clacu02g1226 Cmu02g1193 Cre02g1505 . Csa02g01391 . Cme11g00381
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00254 Cmo_Chr02 FPKM 9.915422 11.60741 2.560146 4.24442 7.600973 5.811447 5.012555 4.763027 5.335363 4.367153