Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00256 ATGGAAGACGGCGAGCTTGAATCCTCGAATCCTGAAGTGTTTTCGAGTTCGAATGCCGTTGAGTTTCTGAGTAGCTGCTCGATGGATAGCTTCTTCGATGAGATTCTTAAGGATACTCATGCTTGCACGCATGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCACATACGCACACATGTTTTCATGTTCATACTAAAATTGTTTCCTCCCCTACCGAAGAAAAGGTTTCCACTGATGACACGGCGGAATCTGTGGATAAGAAGACTAAGAAACGCCCGCTAGGTAATCGTGAAGCGGTTCGTAAATACCGTGAGAAGAAGAAGGCAAGAGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGACCTTGAATCAGCAACTGTTGAAGAGATTGCAGGGTCAGGCTGCATTGGAGGCTGAGATTTCGAGGCTCAAATGTTTGCTTGTGGATATTAGAGGAAGAATTGAAGGGGAGATTGGAACATTTCCTTATCAGAAACCAGCCAATTCAGATCTTCCCAATCAAAATATGTCTGGTAGTTACATGATAAATCCCTGTAATGTGCAGTGCAATGATCAGCCGTATTGCCTTCATCCAGGGGCCGATGGAAAAAGTGGAGAGAGCGTTTTGTTGAACGGGCAAAGCTTCAGTGGCTGTGACTTTGAAAATCTTCAGTGCTCGGTTAATCAAAACACAGGAGGAACAAAGGAACTTCCTGATTGTGGATTAGGGGACACAGTTTCTAACATCAATTGCGCCGAATTTAATCAGAAGAAAGGTGTCTATGAAAGAATCTGTCCAAGTTATAAATGGGAAGAGCTGATCGTGGATGGTATCTGCATCCTTTCGTGTACATCATCAGCTACGTCGGGTCGGTTCCTGCTCCGTCCAGTGCAGCATCAACATCCTCTTTCAGAATTAGGAAATGGTGGGATATCCAGACCCGAGCCATCTCGAAACATCTCACGGAAACTTAGATCTGCATTCAATGTGCAAGAGTACTTAAGTAGCATGTCCAATCTAATCAGAAACGTGACAGGACTCTATCGAAGCGGAGGACTATTGTTCCTTATCTTCCAAGTGATCCATGTCGACCAAGTCGGGTACGTATGCCATTCTGAGAACTTCTGTCTCACATATCTTGCTTAA 1155 44.42 MEDGELESSNPEVFSSSNAVEFLSSCSMDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKTKKRPLGNREAVRKYREKKKARAASLEDEVVRLRTLNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYQKPANSDLPNQNMSGSYMINPCNVQCNDQPYCLHPGADGKSGESVLLNGQSFSGCDFENLQCSVNQNTGGTKELPDCGLGDTVSNINCAEFNQKKGVYERICPSYKWEELIVDGICILSCTSSATSGRFLLRPVQHQHPLSELGNGGISRPEPSRNISRKLRSAFNVQEYLSSMSNLIRNVTGLYRSGGLLFLIFQVIHVDQVGYVCHSENFCLTYLA 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1232286 1235198 + CmoCh02G002560.1 Cmo02g00256 375853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00256 384 Coils Coil 98 132 - -
Cmo02g00256 384 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Cmo02g00256 384 MobiDBLite consensus disorder prediction 72 98 - -
Cmo02g00256 384 CDD bZIP 90 144 - -
Cmo02g00256 384 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 239 - -
Cmo02g00256 384 MobiDBLite consensus disorder prediction 77 98 - -
Cmo02g00256 384 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
Cmo02g00256 384 Gene3D - 75 153 - -
Cmo02g00256 384 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Cmo02g00256 384 SMART brlzneu 84 152 IPR004827 GO:0003700|GO:0006355
Cmo02g00256 384 PANTHER BASIC LEUCINE ZIPPER 23 1 239 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00256 Cmo11g01739 CCT
Cmo02g00256 Cmo19g00747 CCT
Cmo02g00256 Cmo20g00745 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00256 Cmo-Chr2:1232286 Cmo16g00688 Cmo-Chr16:3407956 5.18E-06 dispersed
Cmo11g01739 Cmo-Chr11:12283825 Cmo02g00256 Cmo-Chr2:1232286 1.98E-129 wgd
Cmo19g00747 Cmo-Chr19:7647003 Cmo02g00256 Cmo-Chr2:1232286 5.08E-134 wgd
Cmo02g00256 Cmo-Chr2:1232286 Cmo20g00745 Cmo-Chr20:3731642 1.57E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9210 PF07716 bZIP_2 8.90E-15 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00256 K25785 - csv:101219501 478.018