Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00294 ATGTGTATAGCAGCGTTTCTGTGGCAAGCTCATCCGCTATATCCATTCTTCCTTCTGCTCAATCGTGACGAATATCACAGTAGGCCCACGAAGCCGCTGGAATGGTGGGAATGTAACGAAATTTTGGGCGGGAGAGATGGTTTGGCCGGCGGGACGTGGCTGGCTTGCTCAAGAAATGGCAGAGTTGCATTTCTCACAAATTTCAGGGAAGTTGAATTACTTCCTCAGGCTAAAAGCAGAGGAGAGCTCCCCGTTCGTTTCTTGAAGAGCAAGACAACTCCCCTCGACTTCGCCAAAGAAGTCGAAAAGGAAGCGCACCAGTACAACGGTTTCAACTTGATAATCGTCGACATTCCCTCGAAAACCATGTTTTATATCACCAACAGACCAATTAACAACAGCGACAGCCTTGTCACTGAGGTCCCCCCTGGCATTCATGTCCTCACAAATGCACAACTCGACTCTCCATGGCCCAAGGCACTGCGACTGGACCAGAGTTTGAGAGAGTTCGTGAACAAAAATGGCGACAGGGAACTTCCAGTAAAAGAGATGGTTGAAAAGCTAATGATCAACACAATTAAAGACGATGTGAGCTTGCTACCCGGCATCTATTCTCCTCGAAGGGAATATCAATACAGTTCCATATTCGTCGATACAGATTCCGAACTGGGACGTTATGGAACTGGAAGCATATCTGCTTTGTCTGTGAAGAACAGTGGGGAAGCTTCATTCTTTGAAAAGCATTTGGAGAACGATGCATGGATTGACAGCAGTTTTACCTTCCAGATTGAGAACTTCTGA 801 46.69 MCIAAFLWQAHPLYPFFLLLNRDEYHSRPTKPLEWWECNEILGGRDGLAGGTWLACSRNGRVAFLTNFREVELLPQAKSRGELPVRFLKSKTTPLDFAKEVEKEAHQYNGFNLIIVDIPSKTMFYITNRPINNSDSLVTEVPPGIHVLTNAQLDSPWPKALRLDQSLREFVNKNGDRELPVKEMVEKLMINTIKDDVSLLPGIYSPRREYQYSSIFVDTDSELGRYGTGSISALSVKNSGEASFFEKHLENDAWIDSSFTFQIENF 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1473073 1476674 + CmoCh02G002940.1 Cmo02g00294 375891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00294 266 PANTHER TRANSPORT/GOLGI ORGANIZATION-LIKE PROTEIN (DUF833) 1 265 - -
Cmo02g00294 266 Pfam Transport and Golgi organisation 2 1 250 IPR008551 -
Cmo02g00294 266 PANTHER SER/THR-RICH PROTEIN T10 IN DGCR REGION 1 265 IPR008551 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00294 - - - vvi:100853903 369.777
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g295 . Blo15g00423 Bda06g00442 . Bpe07g00675 . . Bma12g00881 . . Cma02g00299 . Car02g00180 . . . . . . . . . . . . . . . . . . . . . Cone10ag1212 . . . . . . . . . . . . . Cmo02g00294 . . . . . . Cpe05g01337 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005494 2 1 1 2 2 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 2 2 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00294 Cmo_Chr02 FPKM 14.308373 15.48682 13.919894 14.818546 15.229409 15.231107 14.044818 13.258254 13.574783 14.458799