Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00300 ATGAATTTCAAATCTCTTAATCTTCTTCTCCTATCCATCACAACCCTTTTCTTGTTTCTCTCAATTTCTACAGCCGAAGAAGATCCATTATCTTCCTCTTCAATCGTATCAAGATTCCAACGATACCTTCAGATCAACACCGTTCAGCCCAATCCCCAATACTATGAAGCAGCCGATTTCCTCATTTCTCAAGCCAAATCGCTCTCCCTTGAATACCACACCGTCGAATTCGTCGTGGGCAAGCCTCTCGTCCTCCTCAAATGGCCTGGTTCGAACCCTAATCTTCCTTCGATCCTTCTCAATTCGCATACCGATGTTGTTCCATTCGAGCATCACAAATGGACGCACCCTCCTCTTGGAGCTCATATCGATTCCCATGGAAATATCTATGCCAGAGGGTCTCAGGATATGAAGTGCGTTGGGATGCAATACCTCGAGGCTATTCGGCGTTTGAAGGCTTCTGGGTTTGAGCCTGTGCGATCTGTTTACTTATCTTTTGTTCCAGATGAAGAAATTGGTGGCCATGGTGGTGCTGAGAAGTTCGCTGAATCTGATGAGTTCAAGAAGTTGAACGTCGCCATTACTAATGGAGTTCATAAATCATTAGGATTGCCTTCTCCGGGTGAGAATTATAGGGCGTTTTATGGGGAGAGGAGCCCTTGGTGGCTGGTGATCAAGGCAGTGGGAGCGCCTGGCCATGGAGCTAAGCTTTATGATAATGCTGCGTTGGAGAATCTGTTCAAAAGTATTGAGAGTGTGAGAAGGTTCAGAGCTTCTCAGTTTGATTTGTTGAAGGCTGGTTTGAAGGCTGAAGGAGAGGTGGTCTCTGTCAACATGGTGTCCTTAAAAGCTGGGACTCCATCTCCTACTGGCTTTGTTATGAATCTGCAACCATCCGAAGCTGAGGCTGGTTTTGACGTTCGCCTCCCACCGACTGCAGATCCAGAGTCTCTCGAGAGACGAATCACAGAGGAATGGGCACCAGTTTCTCGTAACATGACATTTGAGTTTAAGCAAAAGGAGTCTATTTACGACAAGTTCGGGAAACCAGCTCTCACCGCTATCGACAGTTCAAACCCGTGGTGGAATCTTCTTGAAGAAGCTGTGAGCAATGCTAATGGGAAACTTGGAAACCCAGAAATCTTTCCCGCTTCAACCGATGCCCGGTACTTTCGAAATCAAGGTCTCCCTGCGATCGGCTTCTCTCCAATGGCGAACACTCCTAGTCTTCTTCATGACCATAATGAGTTTCTGAACCAAGCTGAGTATTTGAAAGGCATCGAGGTGTACGAGTCAATAATCAAGTTTTATGCTTCTTACGTCGGTCGCGACAACTTCAAAGACGAATTACCTTTTGATTTACCCGAAGCGGAAGAAGAATTAGATTACCTTTTGATTTACCCGAAGCGGAAGAAGAATTAG 1422 45.92 MNFKSLNLLLLSITTLFLFLSISTAEEDPLSSSSIVSRFQRYLQINTVQPNPQYYEAADFLISQAKSLSLEYHTVEFVVGKPLVLLKWPGSNPNLPSILLNSHTDVVPFEHHKWTHPPLGAHIDSHGNIYARGSQDMKCVGMQYLEAIRRLKASGFEPVRSVYLSFVPDEEIGGHGGAEKFAESDEFKKLNVAITNGVHKSLGLPSPGENYRAFYGERSPWWLVIKAVGAPGHGAKLYDNAALENLFKSIESVRRFRASQFDLLKAGLKAEGEVVSVNMVSLKAGTPSPTGFVMNLQPSEAEAGFDVRLPPTADPESLERRITEEWAPVSRNMTFEFKQKESIYDKFGKPALTAIDSSNPWWNLLEEAVSNANGKLGNPEIFPASTDARYFRNQGLPAIGFSPMANTPSLLHDHNEFLNQAEYLKGIEVYESIIKFYASYVGRDNFKDELPFDLPEAEEELDYLLIYPKRKKN 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1495844 1500034 - CmoCh02G003000.1 Cmo02g00300 375897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00300 473 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 98 107 IPR001261 -
Cmo02g00300 473 Gene3D - 359 439 - -
Cmo02g00300 473 PIRSF ACY-1 25 442 - -
Cmo02g00300 473 Pfam Peptidase family M20/M25/M40 99 434 IPR002933 GO:0016787
Cmo02g00300 473 Gene3D - 222 331 - -
Cmo02g00300 473 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 134 173 IPR001261 -
Cmo02g00300 473 TIGRFAM Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase 32 439 IPR010159 GO:0004046|GO:0005737|GO:0006520
Cmo02g00300 473 PANTHER BNAA06G40880D PROTEIN 14 450 - -
Cmo02g00300 473 Gene3D Zn peptidases 29 221 - -
Cmo02g00300 473 Pfam Peptidase dimerisation domain 215 325 IPR011650 -
Cmo02g00300 473 PANTHER AMINOACYLASE-1 14 450 - -
Cmo02g00300 473 SUPERFAMILY Zn-dependent exopeptidases 34 439 - -
Cmo02g00300 473 CDD M20_AcylaseI_like 36 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00300 K14677 ACY1; aminoacylase [EC:3.5.1.14] - csv:101213747 775.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00300 Cmo-Chr2:1495844 Cmo04g02462 Cmo-Chr4:18205007 5.54E-173 dispersed
Cmo02g00300 Cmo-Chr2:1495844 Cmo02g01649 Cmo-Chr2:9510395 3.30E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g310 . . . . . . . . . . Cma02g00306 . Car02g00185 . . . . . . . . . . . . . . . . . . . . Cone17ag1276 . . . . . . . . . . . . . . Cmo02g00300 . . . . . . Cpe05g01333 . . . . . . . Cla02g01055 Cam02g1127 Cec02g1131 Cco02g1169 Clacu02g1115 Cmu02g1078 Cre02g1382 . . . Cme11g01027
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011281 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00300 Cmo_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0