Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00304 ATGGGTTTGCAATACGGCTGGGTGGGGGGCATGTTTATTGGCAAGTGGGGACTTTATCTTCAACCGTCACCCGTTGTGCACACTACCTGTTTGATCAAAGTCCTCACAGAGTTTTTGGGTCTGAAACTTCACTTTCTAAGCCCGACATGGTTTCTTGTTTGCCAGAATTCTGTTGAAAGGCTGTTCTCTTCACAAATTAAAGAGAGACATTGGCAATGGAGGATAAGCGAGGAAAATGTAGCAAAAGAAGACAGAAAAAGCTGGCAATCCTCTTCTAAAGGGGTAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCTGAGTGGGGACTGGTGGTAGAAACAGATGCGGAGGATGGCAGTTTCAAGGCCATTGTGGGAAGATCATCAGGGGAGGGAGGCGGCAGCAAAAGTTCATCAGAGAAAATTAGTGGCGCGGGAAAAACTGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCCGACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGGTTCAGATGAGATCATTGGAAAAAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGAAAAAATTCGATATGCAGTGAAGAACGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAATCACGCCTATCAAGGATGACAATGGCAGCACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCAAAGTTGATAGAGCATTACGACCGAATGGGTTACCGAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCATTGGGTTCCATCACAGAGGTTGTTCAGACTGTGAAGAACCCTCGATCTAATAATCGAGCTATGAGTCACGACATTACCAGGAAAAAAGAAGAGTTGGAGAAGTTAAATTTTGACTCTGTTCTTCCCAAGTCAGTTGCAGCTGCAAATTATTCACCGGGTAGACAGACTCCTCAACAGGACCTCACAGATGATGGCTTAGGCAAGAAATCTAGGTTATCAAGTCGAGTTTCTTTAACAGGGCAAAAAGGGAAATCTCTTAGCAGTTCAAGAAATCTTGAAGTAACAGCCCTTGAACCAGAAATTTTGATGACGGATGAAATAGAACGGACTGATAGTTTGGACCGTGCTGAAAGAGAAAGGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGCATTGAGAAAAACTTCGTCATTTCTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTCGAGTTGACAGAATATACACGTGAAGAAATTTTGGGACGGAATTGCCGGTTTCTTCAAGGACCTGAAACAGATCAAGATACCGTCTCAAAGATTAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTACACCAAGACGGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCGATGCGTGATGAAACGGGAGAGCTTCAGTATTTTATCGGTGTACAACTAGATGGAAGTGGTCGTGTGGAACCTTTGCAAAACCGTCTTTCTGAGACAGCAGAGCAGCAGAGTGCCATGCTGGTTAGAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTTATTCTCAACCAGTCTTCCCAAGGCCTCACAAAAAGCATAGCTCTTCTTGGACTGCTATACAAAAGATTATTCAACGTCGTGAAAAAATTGGACTCCAACATTTTAAGCCAATCAAACCACTGGGTTATGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAACACTTCTGAATCGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCGTTGCACTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACACACGTTTGTTTGATATCAGACTTTTGCCCTGGTGGGGAGTTATTTGCATTGCTTGATAAGCAGCCAATGAAATTGTTTAAAGAGGATTCTGCTAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAGTATCTTCACTGTCTAGGAATCATCTATCGAGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCACGTTACGCTTGCTGACTTCGATTTATCGCTTATGACAGCCTGCAAACCACAGATTGTGAAGTATCCATTGCCTCACGGTAGAAGGAGATCTCGAAGTCAACCACCGCCAGTATTTGTTGCGGAGCCGATGACACAGTCGAACTCATTTGTTGGAACCGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATTTTGTTGTACGAGATGCTTTACGGCCGCACGCCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCCTGCACAAAGATCTCACCTTCCCAAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGCTGATCAACGCATTGCTACAACGAGACCCTGCCCGACGTTTAGGATCGAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCGCTGATCCGGTGCATGGTCCCACCACCATTAGAATCACCTCTTAACCTTACTGGGAAAGATGAATCTGCCAAGAACGTAAACTGGGAAGATGATGGAGCTTGTATAATTCCAAGTTTGTTGTCATCATTCACAGTCAATAAGTCCCGGTTCGTTACCGGCATACACAGCCACCCCGATAATTGTTTCGGTGTTCTTGGGACGGGATGA 2979 44.61 MGLQYGWVGGMFIGKWGLYLQPSPVVHTTCLIKVLTEFLGLKLHFLSPTWFLVCQNSVERLFSSQIKERHWQWRISEENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSFKAIVGRSSGEGGGSKSSSEKISGAGKTESSGVFPRVSQELKDALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEIIGKNCRFLQGPETDQKEVEKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGMQVEVSKYTEGKVDRALRPNGLPKSLIRYDARQKEKALGSITEVVQTVKNPRSNNRAMSHDITRKKEELEKLNFDSVLPKSVAAANYSPGRQTPQQDLTDDGLGKKSRLSSRVSLTGQKGKSLSSSRNLEVTALEPEILMTDEIERTDSLDRAERERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQDTVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGRVEPLQNRLSETAEQQSAMLVRATAENVDEAVRELPDANLRPEDLWAIYSQPVFPRPHKKHSSSWTAIQKIIQRREKIGLQHFKPIKPLGYGDTGSVHLVELLGTSELYALKAMEKSTLLNRNKVHRACIERQIVALLDHPFLPTLYTSFETPTHVCLISDFCPGGELFALLDKQPMKLFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLMTACKPQIVKYPLPHGRRRSRSQPPPVFVAEPMTQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLNLTGKDESAKNVNWEDDGACIIPSLLSSFTVNKSRFVTGIHSHPDNCFGVLGTG 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1529636 1541080 - CmoCh02G003040.1 Cmo02g00304 375901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00304 992 ProSiteProfiles PAC domain profile. 504 558 IPR000700 -
Cmo02g00304 992 ProSiteProfiles PAC domain profile. 232 286 IPR000700 -
Cmo02g00304 992 PANTHER BNAA02G07840D PROTEIN 129 959 - -
Cmo02g00304 992 MobiDBLite consensus disorder prediction 125 154 - -
Cmo02g00304 992 Gene3D PAS domain 419 583 - -
Cmo02g00304 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 752 764 IPR008271 GO:0004672|GO:0006468
Cmo02g00304 992 ProSiteProfiles PAS repeat profile. 158 231 IPR000014 -
Cmo02g00304 992 Pfam PAS domain 453 545 IPR000014 -
Cmo02g00304 992 Pfam PAS domain 179 275 IPR000014 -
Cmo02g00304 992 TIGRFAM sensory_box: PAS domain S-box protein 185 275 IPR000014 -
Cmo02g00304 992 TIGRFAM sensory_box: PAS domain S-box protein 456 545 IPR000014 -
Cmo02g00304 992 CDD PAS 453 545 IPR000014 -
Cmo02g00304 992 SMART pac_2 235 277 IPR001610 -
Cmo02g00304 992 SMART pac_2 507 549 IPR001610 -
Cmo02g00304 992 PANTHER FLIPPASE KINASE 1-RELATED 129 959 - -
Cmo02g00304 992 SUPERFAMILY Protein kinase-like (PK-like) 606 946 IPR011009 -
Cmo02g00304 992 Gene3D Phosphorylase Kinase; domain 1 630 714 - -
Cmo02g00304 992 CDD STKc_phototropin_like 629 937 - -
Cmo02g00304 992 ProSiteProfiles PAS repeat profile. 430 503 IPR000014 -
Cmo02g00304 992 CDD PAS 185 274 IPR000014 -
Cmo02g00304 992 Gene3D PAS domain 172 344 - -
Cmo02g00304 992 SMART pas_2 432 501 IPR000014 -
Cmo02g00304 992 SMART pas_2 160 229 IPR000014 -
Cmo02g00304 992 MobiDBLite consensus disorder prediction 132 147 - -
Cmo02g00304 992 SUPERFAMILY PYP-like sensor domain (PAS domain) 449 545 IPR035965 -
Cmo02g00304 992 SMART serkin_6 631 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00304 992 Pfam Protein kinase domain 633 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00304 992 ProSitePatterns Protein kinases ATP-binding region signature. 637 660 IPR017441 GO:0005524
Cmo02g00304 992 ProSiteProfiles Protein kinase domain profile. 631 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00304 992 MobiDBLite consensus disorder prediction 353 396 - -
Cmo02g00304 992 MobiDBLite consensus disorder prediction 355 369 - -
Cmo02g00304 992 MobiDBLite consensus disorder prediction 378 396 - -
Cmo02g00304 992 Gene3D Transferase(Phosphotransferase) domain 1 715 936 - -
Cmo02g00304 992 SUPERFAMILY PYP-like sensor domain (PAS domain) 179 271 IPR035965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00304 Cmo19g00847 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00304 Cmo-Chr2:1529636 Cmo02g00853 Cmo-Chr2:5187055 0 dispersed
Cmo04g01708 Cmo-Chr4:8650463 Cmo02g00304 Cmo-Chr2:1529636 1.50E-24 dispersed
Cmo19g00847 Cmo-Chr19:8226861 Cmo02g00304 Cmo-Chr2:1529636 4.47E-16 wgd
Cmo02g00304 Cmo-Chr2:1529636 Cmo20g00685 Cmo-Chr20:3370425 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74089 PF00069 Pkinase 2.50E-61 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00304 K20715 - csv:101215355 1561.97