Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00304 | ATGGGTTTGCAATACGGCTGGGTGGGGGGCATGTTTATTGGCAAGTGGGGACTTTATCTTCAACCGTCACCCGTTGTGCACACTACCTGTTTGATCAAAGTCCTCACAGAGTTTTTGGGTCTGAAACTTCACTTTCTAAGCCCGACATGGTTTCTTGTTTGCCAGAATTCTGTTGAAAGGCTGTTCTCTTCACAAATTAAAGAGAGACATTGGCAATGGAGGATAAGCGAGGAAAATGTAGCAAAAGAAGACAGAAAAAGCTGGCAATCCTCTTCTAAAGGGGTAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCTGAGTGGGGACTGGTGGTAGAAACAGATGCGGAGGATGGCAGTTTCAAGGCCATTGTGGGAAGATCATCAGGGGAGGGAGGCGGCAGCAAAAGTTCATCAGAGAAAATTAGTGGCGCGGGAAAAACTGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCCGACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGGTTCAGATGAGATCATTGGAAAAAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGAAAAAATTCGATATGCAGTGAAGAACGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAATCACGCCTATCAAGGATGACAATGGCAGCACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCAAAGTTGATAGAGCATTACGACCGAATGGGTTACCGAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCATTGGGTTCCATCACAGAGGTTGTTCAGACTGTGAAGAACCCTCGATCTAATAATCGAGCTATGAGTCACGACATTACCAGGAAAAAAGAAGAGTTGGAGAAGTTAAATTTTGACTCTGTTCTTCCCAAGTCAGTTGCAGCTGCAAATTATTCACCGGGTAGACAGACTCCTCAACAGGACCTCACAGATGATGGCTTAGGCAAGAAATCTAGGTTATCAAGTCGAGTTTCTTTAACAGGGCAAAAAGGGAAATCTCTTAGCAGTTCAAGAAATCTTGAAGTAACAGCCCTTGAACCAGAAATTTTGATGACGGATGAAATAGAACGGACTGATAGTTTGGACCGTGCTGAAAGAGAAAGGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGCATTGAGAAAAACTTCGTCATTTCTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTCGAGTTGACAGAATATACACGTGAAGAAATTTTGGGACGGAATTGCCGGTTTCTTCAAGGACCTGAAACAGATCAAGATACCGTCTCAAAGATTAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTACACCAAGACGGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCGATGCGTGATGAAACGGGAGAGCTTCAGTATTTTATCGGTGTACAACTAGATGGAAGTGGTCGTGTGGAACCTTTGCAAAACCGTCTTTCTGAGACAGCAGAGCAGCAGAGTGCCATGCTGGTTAGAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTTATTCTCAACCAGTCTTCCCAAGGCCTCACAAAAAGCATAGCTCTTCTTGGACTGCTATACAAAAGATTATTCAACGTCGTGAAAAAATTGGACTCCAACATTTTAAGCCAATCAAACCACTGGGTTATGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAACACTTCTGAATCGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCGTTGCACTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACACACGTTTGTTTGATATCAGACTTTTGCCCTGGTGGGGAGTTATTTGCATTGCTTGATAAGCAGCCAATGAAATTGTTTAAAGAGGATTCTGCTAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAGTATCTTCACTGTCTAGGAATCATCTATCGAGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCACGTTACGCTTGCTGACTTCGATTTATCGCTTATGACAGCCTGCAAACCACAGATTGTGAAGTATCCATTGCCTCACGGTAGAAGGAGATCTCGAAGTCAACCACCGCCAGTATTTGTTGCGGAGCCGATGACACAGTCGAACTCATTTGTTGGAACCGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATTTTGTTGTACGAGATGCTTTACGGCCGCACGCCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCCTGCACAAAGATCTCACCTTCCCAAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGCTGATCAACGCATTGCTACAACGAGACCCTGCCCGACGTTTAGGATCGAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCGCTGATCCGGTGCATGGTCCCACCACCATTAGAATCACCTCTTAACCTTACTGGGAAAGATGAATCTGCCAAGAACGTAAACTGGGAAGATGATGGAGCTTGTATAATTCCAAGTTTGTTGTCATCATTCACAGTCAATAAGTCCCGGTTCGTTACCGGCATACACAGCCACCCCGATAATTGTTTCGGTGTTCTTGGGACGGGATGA | 2979 | 44.61 | MGLQYGWVGGMFIGKWGLYLQPSPVVHTTCLIKVLTEFLGLKLHFLSPTWFLVCQNSVERLFSSQIKERHWQWRISEENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSFKAIVGRSSGEGGGSKSSSEKISGAGKTESSGVFPRVSQELKDALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEIIGKNCRFLQGPETDQKEVEKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGMQVEVSKYTEGKVDRALRPNGLPKSLIRYDARQKEKALGSITEVVQTVKNPRSNNRAMSHDITRKKEELEKLNFDSVLPKSVAAANYSPGRQTPQQDLTDDGLGKKSRLSSRVSLTGQKGKSLSSSRNLEVTALEPEILMTDEIERTDSLDRAERERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQDTVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGRVEPLQNRLSETAEQQSAMLVRATAENVDEAVRELPDANLRPEDLWAIYSQPVFPRPHKKHSSSWTAIQKIIQRREKIGLQHFKPIKPLGYGDTGSVHLVELLGTSELYALKAMEKSTLLNRNKVHRACIERQIVALLDHPFLPTLYTSFETPTHVCLISDFCPGGELFALLDKQPMKLFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLMTACKPQIVKYPLPHGRRRSRSQPPPVFVAEPMTQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLNLTGKDESAKNVNWEDDGACIIPSLLSSFTVNKSRFVTGIHSHPDNCFGVLGTG | 992 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1529636 | 1541080 | - | CmoCh02G003040.1 | Cmo02g00304 | 375901 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00304 | 992 | ProSiteProfiles | PAC domain profile. | 504 | 558 | IPR000700 | - | |
Cmo02g00304 | 992 | ProSiteProfiles | PAC domain profile. | 232 | 286 | IPR000700 | - | |
Cmo02g00304 | 992 | PANTHER | BNAA02G07840D PROTEIN | 129 | 959 | - | - | |
Cmo02g00304 | 992 | MobiDBLite | consensus disorder prediction | 125 | 154 | - | - | |
Cmo02g00304 | 992 | Gene3D | PAS domain | 419 | 583 | - | - | |
Cmo02g00304 | 992 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 752 | 764 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo02g00304 | 992 | ProSiteProfiles | PAS repeat profile. | 158 | 231 | IPR000014 | - | |
Cmo02g00304 | 992 | Pfam | PAS domain | 453 | 545 | IPR000014 | - | |
Cmo02g00304 | 992 | Pfam | PAS domain | 179 | 275 | IPR000014 | - | |
Cmo02g00304 | 992 | TIGRFAM | sensory_box: PAS domain S-box protein | 185 | 275 | IPR000014 | - | |
Cmo02g00304 | 992 | TIGRFAM | sensory_box: PAS domain S-box protein | 456 | 545 | IPR000014 | - | |
Cmo02g00304 | 992 | CDD | PAS | 453 | 545 | IPR000014 | - | |
Cmo02g00304 | 992 | SMART | pac_2 | 235 | 277 | IPR001610 | - | |
Cmo02g00304 | 992 | SMART | pac_2 | 507 | 549 | IPR001610 | - | |
Cmo02g00304 | 992 | PANTHER | FLIPPASE KINASE 1-RELATED | 129 | 959 | - | - | |
Cmo02g00304 | 992 | SUPERFAMILY | Protein kinase-like (PK-like) | 606 | 946 | IPR011009 | - | |
Cmo02g00304 | 992 | Gene3D | Phosphorylase Kinase; domain 1 | 630 | 714 | - | - | |
Cmo02g00304 | 992 | CDD | STKc_phototropin_like | 629 | 937 | - | - | |
Cmo02g00304 | 992 | ProSiteProfiles | PAS repeat profile. | 430 | 503 | IPR000014 | - | |
Cmo02g00304 | 992 | CDD | PAS | 185 | 274 | IPR000014 | - | |
Cmo02g00304 | 992 | Gene3D | PAS domain | 172 | 344 | - | - | |
Cmo02g00304 | 992 | SMART | pas_2 | 432 | 501 | IPR000014 | - | |
Cmo02g00304 | 992 | SMART | pas_2 | 160 | 229 | IPR000014 | - | |
Cmo02g00304 | 992 | MobiDBLite | consensus disorder prediction | 132 | 147 | - | - | |
Cmo02g00304 | 992 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 449 | 545 | IPR035965 | - | |
Cmo02g00304 | 992 | SMART | serkin_6 | 631 | 918 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00304 | 992 | Pfam | Protein kinase domain | 633 | 918 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00304 | 992 | ProSitePatterns | Protein kinases ATP-binding region signature. | 637 | 660 | IPR017441 | GO:0005524 | |
Cmo02g00304 | 992 | ProSiteProfiles | Protein kinase domain profile. | 631 | 918 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00304 | 992 | MobiDBLite | consensus disorder prediction | 353 | 396 | - | - | |
Cmo02g00304 | 992 | MobiDBLite | consensus disorder prediction | 355 | 369 | - | - | |
Cmo02g00304 | 992 | MobiDBLite | consensus disorder prediction | 378 | 396 | - | - | |
Cmo02g00304 | 992 | Gene3D | Transferase(Phosphotransferase) domain 1 | 715 | 936 | - | - | |
Cmo02g00304 | 992 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 179 | 271 | IPR035965 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00304 | Cmo19g00847 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00304 | Cmo-Chr2:1529636 | Cmo02g00853 | Cmo-Chr2:5187055 | 0 | dispersed | |
Cmo04g01708 | Cmo-Chr4:8650463 | Cmo02g00304 | Cmo-Chr2:1529636 | 1.50E-24 | dispersed | |
Cmo19g00847 | Cmo-Chr19:8226861 | Cmo02g00304 | Cmo-Chr2:1529636 | 4.47E-16 | wgd | |
Cmo02g00304 | Cmo-Chr2:1529636 | Cmo20g00685 | Cmo-Chr20:3370425 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74089 | PF00069 | Pkinase | 2.50E-61 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00304 | K20715 | - | csv:101215355 | 1561.97 |