Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00307 ATGGGGGCTATCGATTCCATAGGCATAAGGCTCAACAACAATGCCCATCATTACCCTCTTTCTTCTTCAATTTCTGCCCCAAATGACTGTTGCAGCAGCTATGGCCGTTTCTTGGGTCTTCGTTTTTCTCTTCGCCCAAAACGAACTGGGTTTCGTTTTAGGTCATTTTGCGCTCTGCCCGGCAGCGGAGAATCTGAATCCCCTGTTCCTGGTAGCAGCGACGGTCGGTTTAGCAGAGGCGAAGGTTCGCCGTCGGCGACGGGTATAAAATGGAGCAAAGAAGAGGAGGAAGAAGAAGACAATACAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTATCCCCTCTGGAATTGGGAGTTCAACAATAATCTCATCGTGTTTCGTTGGTGTTCTTACGGGCATCGGCGTCGTGCTCTTCAATAACGCAGTGCATGAGCTACGTGATTTTTTCTGGGATGGAATTCCTAATAGAGGAGCTTCTTGGTTAAGAGAAATGCCTGTTGAAGAAACATGGAAACGAGTTATATTAGTTCCTGCTTGTGGGGGATTTCTTGTCAGCTTTCTAAATCTGCTTAGAGAGGCTACAGACAATGATCCTTCCACTAAACTTAGAGTTCCAGTTTCCATTTCTAATCAATTCAGGGCTGCACTGCAACCTTTCCTTAAGGCTGTAGCTGCTTCTGTAACACTTGGCACAGGTAACTCTTTGGGGCCGGAGGGTCCGAGTGTCGACATCGGTACTTCTGTTGGCAAGGGTGTTTCTACTGTGTTTGACAGGAACTCTAGAACTAAGCTTTCTCTGATAGCTGCAGGATCAGCTGCTGGCATCTCATCTGGGTTTAATGCTGCAGTTGCTGGCTGTTTCTTTGCTGTTGAGTCAGTCCTGTGGCCATCTCCTGCAGATTCAACTTTTTCTCTCACAAACACTACTTCAATGGTTATCTTAAGTGCTGTAATAGCTTCTGCTGTTTCACAAGTTGGTCTTGGGGTCGAACCAGCATTCAAGGTTCCCGAGTACGATTTTCGCTCGCCGAGTGAGCTTCCACTGTATCTGTTGTTGGGTGCACTCTGTGGCTTGGTTTCATTGAGCTTTTCTAAATGCACATCTTATATGCTTGCAACCGTCGACAAAGTTCATAAGGACTTCGGTGTGTCGAGGGCTTTGTTTCCTATTCTAGGTGGCTTCTCTACTGGACTGATAGCCTTGGCATACCCTGAAATTCTGTACTGGGGGTTTGAGAATGTTGATCTTTTGTTGGAATCTCGGCCATTTGTGAAACCCCTCTCAGCTGAATTGTTGGCCCAGCTTGTTGTTGTCAAGATTTTGGCGACCTCTTTGTGTAGAGCATCTGGACTAGTAGGAGGGTACTATGCGCCATCTCTGTTTATTGGCGCTGCAACTGGAATGGCATATGGGAAATTCATTGGCATTGCACTTTCTGAGCCCAACACAGCGATCGACTTCTCCATTTTCGAAGTGGCGTCCCCTCAAGCTTATGGATTGGTTGGAATGGCTGCTACTCTTGCTGGGGTTTGTCAGGTGCCTCTTACTGCTGTTTTGTTGCTTTTTGAGCTGACACAGGACTACCGAATTGTTCTTCCTTTACTCGGAGCTGTCGGGGTGTCGTCGTGGTTAACATCCGGTCAGAAAAGGAAAAGGAGTTCCCAGAAGACAAAGAAACTCCCTCTAGGGAAAATTCTTAGTACTCAACAAACTACAACATATGACAGTAATGCAAATGACCAATCTTCCAATTATGCAGATGATGGACAGGAAACTTACCCAAATGATCTCTGTGAAATTGAAAGCTCACTTTGTGCATATGATTCTGATAGCGAAATTGTAGAGTTAGAAAGGAAGATATGTGTGTCTGAAGCCATGACAACAAGATACGTTACTGTCTTCATGGACACTTTCCTTAAAGAAGCGGTAGATCTCATGCTTGCAGAGAAGCAGTCCTGTGCATTGATTGTGGATGAAGAGAACACTTTGATTGGCATATTAGCCCTTGAAGACATTCAAAAGTTAAGCAAAAATGTAATATCAAGAACTGAGAAACTAAAGGGGCTAGTAGTTTCTGAGGTTTTCTCACTGGATGGCGAGATATGTCGAGTACCATGGACAGCAACTCCGAGTATGGACATTCTTACAGCTAAAACGGTTATGAAGAATCTCGGTGTGAGCCAAGTTCCAGTGGTGAAAGATCAGATGGGTTACCTTGTGGGTGTTCTAGACTTGGAGTGTATTGATCTCACTTGCAGAATTCTTGCAACAAGAGAATCCCTCAGCTGA 2304 45.1 MGAIDSIGIRLNNNAHHYPLSSSISAPNDCCSSYGRFLGLRFSLRPKRTGFRFRSFCALPGSGESESPVPGSSDGRFSRGEGSPSATGIKWSKEEEEEEDNTEEDEEEEEEEEEEGIPSGIGSSTIISSCFVGVLTGIGVVLFNNAVHELRDFFWDGIPNRGASWLREMPVEETWKRVILVPACGGFLVSFLNLLREATDNDPSTKLRVPVSISNQFRAALQPFLKAVAASVTLGTGNSLGPEGPSVDIGTSVGKGVSTVFDRNSRTKLSLIAAGSAAGISSGFNAAVAGCFFAVESVLWPSPADSTFSLTNTTSMVILSAVIASAVSQVGLGVEPAFKVPEYDFRSPSELPLYLLLGALCGLVSLSFSKCTSYMLATVDKVHKDFGVSRALFPILGGFSTGLIALAYPEILYWGFENVDLLLESRPFVKPLSAELLAQLVVVKILATSLCRASGLVGGYYAPSLFIGAATGMAYGKFIGIALSEPNTAIDFSIFEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGVSSWLTSGQKRKRSSQKTKKLPLGKILSTQQTTTYDSNANDQSSNYADDGQETYPNDLCEIESSLCAYDSDSEIVELERKICVSEAMTTRYVTVFMDTFLKEAVDLMLAEKQSCALIVDEENTLIGILALEDIQKLSKNVISRTEKLKGLVVSEVFSLDGEICRVPWTATPSMDILTAKTVMKNLGVSQVPVVKDQMGYLVGVLDLECIDLTCRILATRESLS 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1549285 1552321 - CmoCh02G003070.1 Cmo02g00307 375904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00307 767 MobiDBLite consensus disorder prediction 61 122 - -
Cmo02g00307 767 Gene3D - 622 764 IPR046342 -
Cmo02g00307 767 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 110 766 - -
Cmo02g00307 767 MobiDBLite consensus disorder prediction 96 117 - -
Cmo02g00307 767 SMART cbs_1 709 758 IPR000644 -
Cmo02g00307 767 SMART cbs_1 634 682 IPR000644 -
Cmo02g00307 767 ProSiteProfiles CBS domain profile. 631 689 IPR000644 -
Cmo02g00307 767 Pfam CBS domain 627 679 IPR000644 -
Cmo02g00307 767 Pfam Voltage gated chloride channel 223 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo02g00307 767 Gene3D Clc chloride channel 119 565 - -
Cmo02g00307 767 Coils Coil 92 115 - -
Cmo02g00307 767 PRINTS Chloride channel signature 226 245 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo02g00307 767 PRINTS Chloride channel signature 277 296 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo02g00307 767 PRINTS Chloride channel signature 456 476 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo02g00307 767 PRINTS Chloride channel signature 501 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo02g00307 767 PRINTS Chloride channel signature 519 538 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo02g00307 767 SUPERFAMILY CBS-domain pair 622 751 IPR046342 -
Cmo02g00307 767 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 110 766 - -
Cmo02g00307 767 CDD Voltage_gated_ClC 133 547 - -
Cmo02g00307 767 SUPERFAMILY Clc chloride channel 126 551 IPR014743 -
Cmo02g00307 767 CDD CBS_pair_voltage-gated_CLC_euk_bac 631 754 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00307 - - - mcha:111011346 1123.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00307 Cmo-Chr2:1549285 Cmo06g00720 Cmo-Chr6:3667541 2.06E-124 dispersed
Cmo02g00307 Cmo-Chr2:1549285 Cmo16g01038 Cmo-Chr16:7228860 2.48E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g331 . . . . Bpe07g00690 . . Bma12g00894 . . Cma02g00313 . Car02g00193 . . . . . . . . . . . . . . . . . . Cone12ag1281 . . . . . . . . . . . . . . . . Cmo02g00307 . . . . . . Cpe05g01327 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010114 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00307 Cmo_Chr02 FPKM 40.119999 44.599064 6.309466 6.370149 2.622323 2.865736 3.689472 0.206126 0.199642 0.340577