Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00308 ATGGCTTCCAATTCGACGAAGGATGTTGCTGTTGATGAGAAGACAGCTTTGTCAGATAACAAAAGTGCCATAAGTGAAACCAAAAGTGAAACAACCAAAAGCAAAACATCCTCTGCAGAGCAGCAGCCAGATAAACCAAAGGCTCCCTCAGCCTCACTTCCTGAATTTCCTCCAAATCCTTTTGATTTCTCAGCAATGACTGGTTTGCTTAACGATCCTAACATTCAAGAATTAGCTTCTCAAATAGCAAAAGATCCTGCATTTACTCAGATGGCGTCAGAACTTCAGAAGAATTTTCAAGGTGCTTCTGCTCAGCAGGGTATTCCGCAGTTTGATACGCAACAATACTATTCTACTATGCAGCAGGTCATGCAGAATCCTCAATTTATGACAATGGCTGAGCGCCTTGGCAATACATTAATGCAGGATCCATCCATGTCTAGCATGCTGGAAACTTTTGCAAATCCATCCAATAAAGAGCAGCTTGAGGAACGTATGACACAAATCAAGCAAGATCCAACTTTGAAGCCTATTTTAGATGAAATAGAGACTGGTGGTCCAGCTGCGATGATGAGGTACTGGAATGACAGAGATGTCCTGAAAAAGTTGGGCGAAGCAATGGGTTTTGCAATTAATGGAGAAGATGGAGCCAATGCTGAAAGTTCTGTTGCAGATGATTCAGAAGAAGTAGGAAATGATGACGAATCTATAGTTCATCAAACTGCTAGTGTTGGTGATGTCGAGGGCTTAAAAAATGCACTAGCAGCCGGTGAGAACAAGGATGAAGAAGATTCAGAGGGAAGGACCGCTTTGCATTTTGCATGTGGGTATGGTGAGGCGAAATGCGCTCAGATCCTTCTTGAAGCTGGAGTGAAGGTGGATGCACTGGATAAGAACAAGAACACTGCACTTCATTATGCAGCTGGTTATGGCAGGAAGGAGTGTGTTGCACTGTTACTCGAGAATGGCGCTGCAGTCACTCTCCAAAACTTGGATGGAAAGACCCCCATAGATGTTGCCAAGCTAAACAACCAACACGAGGTGCTCAAATTGCTCGAGAAGGACGTTTTCCTCTGCAGTTTAATGAATTTGGGAGCAATATCTTTGAGCAAATGTTTTGATCTGGATTTGAAGAAGAAGAAGAAGAAGAAGATGCTGATGGAGGAGAGGAAGTCGTCCTCCGTATCAGATGTTGGAGCTTGGGGTATGAACATAATCAGCTCAGTGGGCATCATCATGGCCAACAAGCAGCTCATGTCCCAAACTGGCTTTGCCTTTTCCTTTGCTACAACCTTAACTGGATTTCACTTTTCTGCAACTGCAATGGTTGGCTGGATTTCAAATGCTACTGGCTATTCTGAATCCAAATCTGTTCCCTTCTGGGAGCTTCTTTGGTTCTCGATTATCGCCAACACGTCGATAGCAGCCATGAACTTCAGCCTCATGTTAAACTCCGTTGGATTCTATCAGATATCAAAGCTAAGCATGATACCAGTGGTTTGTGTAATGGAATGGATTCTTCATGGAAAACAATACTCAAGGGAAGTGAAGATGGCCGTCGCCGTGGTCGTTGTCGGTGTCGGGGTCTGTACAGTGACTGATGTGAAGGTTAATGCCAAAGGGTTCATTTGTGCCTTGAGTTTCATAGTACTGTCATGCTCCCTTGCTGTGTTCTGCAACATCAGTCAATATCTGTGCATCGGGCGCTTCTCAGCCGTGTCGTTCCAGGTGTTAGGCCATATGAAGACGGTATGCGTGTTGACATTGGGGTGGCTGCTCTTTGATTCAGAGATGACATTGAAGAACATATCAGGAATGGTTCTTGCTGTTGTTGGGATGGTGGTTTATAGCTGGGCAGTTGAGATTGAGAAGCAAGGCAATGCAATGGCTGTCCCTCAAACAAAGAGCCCACTTTCAGATGAGGAGTTGATGCTGTTGAAGGAGGGAATTGAGGAGAGTGGCTTGAGAGATGAAGAGCTTGGTCATGTTCAAAAATCATAA 2001 44.43 MASNSTKDVAVDEKTALSDNKSAISETKSETTKSKTSSAEQQPDKPKAPSASLPEFPPNPFDFSAMTGLLNDPNIQELASQIAKDPAFTQMASELQKNFQGASAQQGIPQFDTQQYYSTMQQVMQNPQFMTMAERLGNTLMQDPSMSSMLETFANPSNKEQLEERMTQIKQDPTLKPILDEIETGGPAAMMRYWNDRDVLKKLGEAMGFAINGEDGANAESSVADDSEEVGNDDESIVHQTASVGDVEGLKNALAAGENKDEEDSEGRTALHFACGYGEAKCAQILLEAGVKVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNLDGKTPIDVAKLNNQHEVLKLLEKDVFLCSLMNLGAISLSKCFDLDLKKKKKKKMLMEERKSSSVSDVGAWGMNIISSVGIIMANKQLMSQTGFAFSFATTLTGFHFSATAMVGWISNATGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKQYSREVKMAVAVVVVGVGVCTVTDVKVNAKGFICALSFIVLSCSLAVFCNISQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSEMTLKNISGMVLAVVGMVVYSWAVEIEKQGNAMAVPQTKSPLSDEELMLLKEGIEESGLRDEELGHVQKS 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1552953 1561790 - CmoCh02G003080.1 Cmo02g00308 375905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00308 666 ProSiteProfiles Ankyrin repeat profile. 266 298 IPR002110 GO:0005515
Cmo02g00308 666 Pfam STI1 domain 165 208 IPR041243 -
Cmo02g00308 666 ProSiteProfiles Ankyrin repeat profile. 299 331 IPR002110 GO:0005515
Cmo02g00308 666 MobiDBLite consensus disorder prediction 18 45 - -
Cmo02g00308 666 ProSiteProfiles Ankyrin repeat region circular profile. 266 298 - -
Cmo02g00308 666 SUPERFAMILY Multidrug resistance efflux transporter EmrE 547 618 - -
Cmo02g00308 666 Pfam Ankyrin repeats (3 copies) 239 330 IPR002110 GO:0005515
Cmo02g00308 666 ProSiteProfiles Ankyrin repeat region circular profile. 299 330 - -
Cmo02g00308 666 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 49 358 - -
Cmo02g00308 666 SUPERFAMILY Ankyrin repeat 231 354 IPR036770 -
Cmo02g00308 666 Gene3D - 236 358 IPR036770 -
Cmo02g00308 666 MobiDBLite consensus disorder prediction 1 68 - -
Cmo02g00308 666 SMART ANK_2a 266 295 IPR002110 GO:0005515
Cmo02g00308 666 SMART ANK_2a 299 328 IPR002110 GO:0005515
Cmo02g00308 666 SMART ANK_2a 233 262 IPR002110 GO:0005515
Cmo02g00308 666 SMART ANK_2a 332 361 IPR002110 GO:0005515
Cmo02g00308 666 Pfam Triose-phosphate Transporter family 408 557 IPR004853 -
Cmo02g00308 666 PANTHER - 49 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00308 - - - csv:101215197 607.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00308 Cmo-Chr2:1552953 Cmo09g00007 Cmo-Chr9:34662 6.54E-53 dispersed
Cmo17g00160 Cmo-Chr17:931998 Cmo02g00308 Cmo-Chr2:1552953 2.84E-12 dispersed
Cmo20g00118 Cmo-Chr20:597234 Cmo02g00308 Cmo-Chr2:1552953 6.85E-16 dispersed
Cmo11g01764 Cmo-Chr11:12436299 Cmo02g00308 Cmo-Chr2:1552953 3.30E-14 transposed
Cmo11g01824 Cmo-Chr11:12767344 Cmo02g00308 Cmo-Chr2:1552953 5.77E-61 wgd
Cmo02g00308 Cmo-Chr2:1552953 Cmo20g00688 Cmo-Chr20:3393298 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001783 1 3 2 2 2 1 4 1 1 2 2 2 4 2 2 4 1 4 2 1 2 2 2 2 2 2 2 4 3 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00308 Cmo_Chr02 FPKM 27.26297 28.39654 57.895107 55.427639 8.524848 7.961755 7.282661 1.405125 1.147293 1.183473