Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00312 ATGGGGGAATTTGAAGATGAGAGCCTTGTTAGTCCTTCCTCATTAACTAGAAAGAACTTTTCTATTGAGGGTCCTTCGCATTCTTCTTCATTGCCTGGTAGTACGCAGAAATTTTGTTATAGTAACATGAAGAACAGGGTGTTTCGCAGCATTAAGATCGTCGTTTTCTCGGCTAAAATCAACTGTCTCATGCCTTTTGGGCCTTTAGCAATAGTAGTCAGCAATTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTCGCCGAGCGTTTGGGTTATGCAACCGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATACGCATTGCGAAGAGGAATGATACGGGTTGTTCAACAGTCATTGTTAGGTTCAATTTTGTCAAATATGTTGTTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAGTTGTGGTTTCGAAGAGGGAGCAGGTCTTCAATAAGGCAGCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCCGAGCTAGCTCTTTCGAGATTTAGTAGCGGCATTATGTTGGTGGCGTATGCTGCCTATCTTGTTTTCCAGCTGAAAAGCGACAAGAACTTATATCTACCGGTTGATGAGGCGGTTACTGATGAAAATTATGATGATGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTACTTGGCTGTCTATCTTGACCATTTGGATCTCTGTCCTCTCTGAATACTTGGTTAATGCAATAGAGGGAGCGTCGGTTGCCATGAACATACCGGTAGCGTTCATTAGTGTTATCCTACTACCCATTGTTGGGAACGCTGCAGAGCATGCAGGAGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTTGCGATAGGATCGTCTACACAGATATCGATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGTTGCCCAATGGACTTGAATTTTCAACTCTTCGAGACTGCCACGCTTTTCATCACGGTCATTGTTGTAGCCTTCATGTTGCAGGACGGAACATCTAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATATTGATCCAGCTTCAGTTGGCAAGGGACGACTCGGAGTCGTGAATGTGCTTGGAGACGGGCCTCAACCTAGCACTCTTCTAAAGACGGGATCGAGTGAAGCTCGAGATACCAACGTTGAAATGTCGGGGCGGGCTGATGGGGGAAGGGATCGATACCGGAAAGATTATTCGTCGAGATATGACGAGAAGTCGCAGTCTGGGCATAGCAATAGCAGTAATCCTCCGTCGAGACATCTCTGGATCGGCAATTTGTCCCATGTTGTGGTGGAGCGGGATATCAACCGCTGTTTTTCACAGTTTGGAGAGCTTGACAGTATTGCTTTTCAGCCCAGTCGTAGCTATGCTTTCATCAATTTCAGAAGGGATGAAGATGCAATTGCAGCCATGAGAGAGCTTCAAGGTTTTGCTCTTGCAGGGAATCCCCTTAGAATTGAGTTTGCCAAGGCGGTCTTAACTGGCATTACCGAAAATGTTAATGGAAACCTGCTCGAGGTCATATCATCTAGGTGCAAACATTTCCGTGTAGGCTGGGTTTATAGTGCTGAGGAAAGCATGGCCTTTGATGAAGAATGGAGTGAGGCAAAAGAATATGATAAGCCATCTGCATCATCACGTGATGAAGCCTATTCTCAACACCGAGAGGATAAATATCTTGGAGCGAAGGGTTCCTTCTCACAGGGACGACATGCTAGTCCTGACGAATTTTATCCTGAAAAGTCCAAAATGAATGATAAAAATGCAGAGCCTAGTGAAGTGTTATGGATAGGATTTCCAGCTTTGTTAAAAGTGGATGAAGTGATATTAAGGAGGGCCTTTTCACCATTTGGGGAAATTGATAAGATTACAACGTTCCCTGGTCGGACGTATGCTTTTGTTCGTTTTCGGGGCGTGACATCAGCTTGGAGGGCAAAAGAAACACTACAGGGGAAACTATTTGGAAATCCCCGAGTACATATTTGTTTCGCAAAAAGTGATTCTGGATCATCAAACAGTGGAAGGAACTCAATGAATGTACCTCTTTCTCCAAGATCTCCTCACCTTTTCTCAAACTTCGATTCTGGAGAATTTGATTCCCGTGGTTTTAATAGGAAAAGCAATTTATTGACCAGTGGAAACAATGCATTTGAAATGAAGAGGTCTGGAGAATTCTCATCCAAATTAGGTCCATCCGAAGATAGGTATGAACATTATGGTAGCCCGACAAAAGAGAGAGGTCTTCATTTAAATAACTTCCCTCAAAGATTTTCTCAACCTAGTCCATTTTATGACGATCCATGGGACTTGCCAGAGGATACGAACGTATATCCCGGGTCCAAGAAATTGAAGACTGGACCCTTTCCCCAGGATAAAGAGCTCCCTGAGTATCCTATATCTGATTTGGAACAAGATAAACGTATTATTCCAAAGTTATACCCTGATTTTCCCCGATCAGAAGCCTTTGATCATAAGATGAAGTCTGGGCCGCCTCTGGGTTATAAACAGCCTGATCAGCCTATGACAATGCCTGACCCTTATGGAGAAAAGAGTGAACACTGGAGGGAACCGTATGATAATTTTCAGGGTCCTGATTCTCTGCCATCGAATGCTGTTGCAAGGAAAAGGCTCTCACCTGATCCAGAACAGTCGTCTATAAAAGAGTGGAAATGGGAAGGAACTATTGCAAAGGGAGGAACACCTGTTTGTCGTGCCCGCTGTTTTCCTGTGGGAAAGGTTCTGGATATGCTTTTTTTGATGCTATCAGATTTGGTTCTGCTGGTATTTGGTTCTTGTCCTCTCTTTAAGTTTCATGGAATTCTGGATTGTTCATTGCCTGAGTTCTTAGACTGTACGGCAAGAACTGGTTTAGACATGCTTTCAAAGCATTACTATGAAGCAGCTAGTGCTTGGGTTGTTTTCTTTGTGCCTGAAAGCGATTCTGATATCGTGTTCTACAATGAATTCATGAACTATCTCGGCGAAAAGCAACGAGCAGCTGTTTCGAAGTTGGATGACAGAACCACCTTGTTTCTTGTACCACCATCTGAGTTCTCAGAAAAAGTGCTCAAAGTACCAGGTAAATTGAGCATTTCAGGGGTAATTCTGAGGTTAGAGCGTCCTGGTACCAGTGCAAGGCCTCCACCTTATCAAAACGAAACAAAGGACACAAATTTTTTACCTTTACATAGTGAAACATCATATACAAAACTACCGCCGTCTCCAGCTGTTTTTACCCCAATACCACCATCTTTATCTGATCTCAGTAAATCAGGAATCAATAATACATCATTCCCCAGGAACGTTGCTACTTCTGCTTCTCCTGTGTTATTTCATGGTTCATCACAATCTGTTGGAAATTTGTCTGACCCATATGTTGAGTGCAGGCCTGATTATCCAATTCAAGAACAGCTAAATGCCATGGGACCGAGCTCGTCTTCTCACCATCTACAGAATTCAATGGTCGATTTTCGAAATTTTCAGTCACAAGCTTCCAACAAGGATCCTGTTATTCAGGAACGCCCTTTGTTCATTCCAAGGGAAATTCAGGAAACAGGTTACAGTAATTACGCAGTTGGGATTTCTAGTGTTACAACTCAACAAGAAACAAAACCAGCAGCTTCTTTGGCAACTACTCTTTCCTCCCTACCGCCCGACCAACTGGCGCAATTAGCATCCTCTCTCCTTGGACATCAAAGGCAGTCGGGGAGCACGCCGAATGCAGCATTGCATGAAGAATTAAGGCAGCGAAACCAGGTGAATGAATCTGTTGTACAATTGGCAAGGTCCCAAAATGGTTCTTTTCAGAATAATCTGATGAACTCTGAGCCTCAGACATCTCAGTTTGTTCAAGTTCCACAGATGCATCATGTACAACAACACCAGATGTCGAATCAGATGTCGAACGTGCCAGCTGGGCAAAGAGAGATTCAGACAGGGGCTTTAGGCAATAATCAACAGGTTCAAAACTCTGATGTAGGTGGAGAATCAGAACCAGATCCACAGAAACGCCTGCAAGCGACGCTTCAGCTTGCAGCTGCTCTTCTCCAGCAAATTCATCAAGGAAAAGGAAGTTGA 4299 43.68 MGEFEDESLVSPSSLTRKNFSIEGPSHSSSLPGSTQKFCYSNMKNRVFRSIKIVVFSAKINCLMPFGPLAIVVSNLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFNKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEAVTDENYDDDDEEAPEISMWESITWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVGKGRLGVVNVLGDGPQPSTLLKTGSSEARDTNVEMSGRADGGRDRYRKDYSSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQFGELDSIAFQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKAVLTGITENVNGNLLEVISSRCKHFRVGWVYSAEESMAFDEEWSEAKEYDKPSASSRDEAYSQHREDKYLGAKGSFSQGRHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLKVDEVILRRAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAKSDSGSSNSGRNSMNVPLSPRSPHLFSNFDSGEFDSRGFNRKSNLLTSGNNAFEMKRSGEFSSKLGPSEDRYEHYGSPTKERGLHLNNFPQRFSQPSPFYDDPWDLPEDTNVYPGSKKLKTGPFPQDKELPEYPISDLEQDKRIIPKLYPDFPRSEAFDHKMKSGPPLGYKQPDQPMTMPDPYGEKSEHWREPYDNFQGPDSLPSNAVARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCFPVGKVLDMLFLMLSDLVLLVFGSCPLFKFHGILDCSLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGVILRLERPGTSARPPPYQNETKDTNFLPLHSETSYTKLPPSPAVFTPIPPSLSDLSKSGINNTSFPRNVATSASPVLFHGSSQSVGNLSDPYVECRPDYPIQEQLNAMGPSSSSHHLQNSMVDFRNFQSQASNKDPVIQERPLFIPREIQETGYSNYAVGISSVTTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQRQSGSTPNAALHEELRQRNQVNESVVQLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQQHQMSNQMSNVPAGQREIQTGALGNNQQVQNSDVGGESEPDPQKRLQATLQLAAALLQQIHQGKGS 1432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1577782 1595448 - CmoCh02G003120.1 Cmo02g00312 375909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00312 1432 Pfam SPOC domain 956 1100 IPR012921 -
Cmo02g00312 1432 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 425 - -
Cmo02g00312 1432 MobiDBLite consensus disorder prediction 637 659 - -
Cmo02g00312 1432 MobiDBLite consensus disorder prediction 893 959 - -
Cmo02g00312 1432 Gene3D - 470 567 IPR012677 -
Cmo02g00312 1432 SUPERFAMILY RNA-binding domain, RBD 678 742 IPR035979 GO:0003676
Cmo02g00312 1432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 495 558 IPR000504 GO:0003723
Cmo02g00312 1432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 684 732 IPR000504 GO:0003723
Cmo02g00312 1432 Gene3D - 653 754 IPR012677 -
Cmo02g00312 1432 Pfam Sodium/calcium exchanger protein 82 237 IPR004837 GO:0016021|GO:0055085
Cmo02g00312 1432 Pfam Sodium/calcium exchanger protein 275 411 IPR004837 GO:0016021|GO:0055085
Cmo02g00312 1432 MobiDBLite consensus disorder prediction 801 818 - -
Cmo02g00312 1432 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 3 425 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cmo02g00312 1432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 666 740 IPR000504 GO:0003723
Cmo02g00312 1432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 493 565 IPR000504 GO:0003723
Cmo02g00312 1432 MobiDBLite consensus disorder prediction 796 875 - -
Cmo02g00312 1432 CDD RRM3_Spen 495 564 - -
Cmo02g00312 1432 SMART rrm1_1 494 561 IPR000504 GO:0003723
Cmo02g00312 1432 SMART rrm1_1 668 736 IPR000504 GO:0003723
Cmo02g00312 1432 MobiDBLite consensus disorder prediction 455 478 - -
Cmo02g00312 1432 Gene3D - 258 415 IPR044880 -
Cmo02g00312 1432 Gene3D - 110 253 IPR044880 -
Cmo02g00312 1432 SUPERFAMILY RNA-binding domain, RBD 480 564 IPR035979 GO:0003676
Cmo02g00312 1432 TIGRFAM caca2: calcium/proton exchanger 49 414 - -
Cmo02g00312 1432 MobiDBLite consensus disorder prediction 440 454 - -
Cmo02g00312 1432 MobiDBLite consensus disorder prediction 440 491 - -
Cmo02g00312 1432 TIGRFAM cax: calcium/proton exchanger 64 414 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00312 Cmo-Chr2:1577782 Cmo06g00700 Cmo-Chr6:3550261 0 dispersed
Cmo16g01015 Cmo-Chr16:7001561 Cmo02g00312 Cmo-Chr2:1577782 1.37E-06 transposed
Cmo02g00312 Cmo-Chr2:1577782 Cmo20g00692 Cmo-Chr20:3416859 0 wgd
Cmo02g00312 Cmo-Chr2:1577782 Cmo20g00692 Cmo-Chr20:3416859 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00312 - - csv:101216073 1398.26