Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00312 | ATGGGGGAATTTGAAGATGAGAGCCTTGTTAGTCCTTCCTCATTAACTAGAAAGAACTTTTCTATTGAGGGTCCTTCGCATTCTTCTTCATTGCCTGGTAGTACGCAGAAATTTTGTTATAGTAACATGAAGAACAGGGTGTTTCGCAGCATTAAGATCGTCGTTTTCTCGGCTAAAATCAACTGTCTCATGCCTTTTGGGCCTTTAGCAATAGTAGTCAGCAATTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTCGCCGAGCGTTTGGGTTATGCAACCGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATACGCATTGCGAAGAGGAATGATACGGGTTGTTCAACAGTCATTGTTAGGTTCAATTTTGTCAAATATGTTGTTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAGTTGTGGTTTCGAAGAGGGAGCAGGTCTTCAATAAGGCAGCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCCGAGCTAGCTCTTTCGAGATTTAGTAGCGGCATTATGTTGGTGGCGTATGCTGCCTATCTTGTTTTCCAGCTGAAAAGCGACAAGAACTTATATCTACCGGTTGATGAGGCGGTTACTGATGAAAATTATGATGATGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTACTTGGCTGTCTATCTTGACCATTTGGATCTCTGTCCTCTCTGAATACTTGGTTAATGCAATAGAGGGAGCGTCGGTTGCCATGAACATACCGGTAGCGTTCATTAGTGTTATCCTACTACCCATTGTTGGGAACGCTGCAGAGCATGCAGGAGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTTGCGATAGGATCGTCTACACAGATATCGATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGTTGCCCAATGGACTTGAATTTTCAACTCTTCGAGACTGCCACGCTTTTCATCACGGTCATTGTTGTAGCCTTCATGTTGCAGGACGGAACATCTAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATATTGATCCAGCTTCAGTTGGCAAGGGACGACTCGGAGTCGTGAATGTGCTTGGAGACGGGCCTCAACCTAGCACTCTTCTAAAGACGGGATCGAGTGAAGCTCGAGATACCAACGTTGAAATGTCGGGGCGGGCTGATGGGGGAAGGGATCGATACCGGAAAGATTATTCGTCGAGATATGACGAGAAGTCGCAGTCTGGGCATAGCAATAGCAGTAATCCTCCGTCGAGACATCTCTGGATCGGCAATTTGTCCCATGTTGTGGTGGAGCGGGATATCAACCGCTGTTTTTCACAGTTTGGAGAGCTTGACAGTATTGCTTTTCAGCCCAGTCGTAGCTATGCTTTCATCAATTTCAGAAGGGATGAAGATGCAATTGCAGCCATGAGAGAGCTTCAAGGTTTTGCTCTTGCAGGGAATCCCCTTAGAATTGAGTTTGCCAAGGCGGTCTTAACTGGCATTACCGAAAATGTTAATGGAAACCTGCTCGAGGTCATATCATCTAGGTGCAAACATTTCCGTGTAGGCTGGGTTTATAGTGCTGAGGAAAGCATGGCCTTTGATGAAGAATGGAGTGAGGCAAAAGAATATGATAAGCCATCTGCATCATCACGTGATGAAGCCTATTCTCAACACCGAGAGGATAAATATCTTGGAGCGAAGGGTTCCTTCTCACAGGGACGACATGCTAGTCCTGACGAATTTTATCCTGAAAAGTCCAAAATGAATGATAAAAATGCAGAGCCTAGTGAAGTGTTATGGATAGGATTTCCAGCTTTGTTAAAAGTGGATGAAGTGATATTAAGGAGGGCCTTTTCACCATTTGGGGAAATTGATAAGATTACAACGTTCCCTGGTCGGACGTATGCTTTTGTTCGTTTTCGGGGCGTGACATCAGCTTGGAGGGCAAAAGAAACACTACAGGGGAAACTATTTGGAAATCCCCGAGTACATATTTGTTTCGCAAAAAGTGATTCTGGATCATCAAACAGTGGAAGGAACTCAATGAATGTACCTCTTTCTCCAAGATCTCCTCACCTTTTCTCAAACTTCGATTCTGGAGAATTTGATTCCCGTGGTTTTAATAGGAAAAGCAATTTATTGACCAGTGGAAACAATGCATTTGAAATGAAGAGGTCTGGAGAATTCTCATCCAAATTAGGTCCATCCGAAGATAGGTATGAACATTATGGTAGCCCGACAAAAGAGAGAGGTCTTCATTTAAATAACTTCCCTCAAAGATTTTCTCAACCTAGTCCATTTTATGACGATCCATGGGACTTGCCAGAGGATACGAACGTATATCCCGGGTCCAAGAAATTGAAGACTGGACCCTTTCCCCAGGATAAAGAGCTCCCTGAGTATCCTATATCTGATTTGGAACAAGATAAACGTATTATTCCAAAGTTATACCCTGATTTTCCCCGATCAGAAGCCTTTGATCATAAGATGAAGTCTGGGCCGCCTCTGGGTTATAAACAGCCTGATCAGCCTATGACAATGCCTGACCCTTATGGAGAAAAGAGTGAACACTGGAGGGAACCGTATGATAATTTTCAGGGTCCTGATTCTCTGCCATCGAATGCTGTTGCAAGGAAAAGGCTCTCACCTGATCCAGAACAGTCGTCTATAAAAGAGTGGAAATGGGAAGGAACTATTGCAAAGGGAGGAACACCTGTTTGTCGTGCCCGCTGTTTTCCTGTGGGAAAGGTTCTGGATATGCTTTTTTTGATGCTATCAGATTTGGTTCTGCTGGTATTTGGTTCTTGTCCTCTCTTTAAGTTTCATGGAATTCTGGATTGTTCATTGCCTGAGTTCTTAGACTGTACGGCAAGAACTGGTTTAGACATGCTTTCAAAGCATTACTATGAAGCAGCTAGTGCTTGGGTTGTTTTCTTTGTGCCTGAAAGCGATTCTGATATCGTGTTCTACAATGAATTCATGAACTATCTCGGCGAAAAGCAACGAGCAGCTGTTTCGAAGTTGGATGACAGAACCACCTTGTTTCTTGTACCACCATCTGAGTTCTCAGAAAAAGTGCTCAAAGTACCAGGTAAATTGAGCATTTCAGGGGTAATTCTGAGGTTAGAGCGTCCTGGTACCAGTGCAAGGCCTCCACCTTATCAAAACGAAACAAAGGACACAAATTTTTTACCTTTACATAGTGAAACATCATATACAAAACTACCGCCGTCTCCAGCTGTTTTTACCCCAATACCACCATCTTTATCTGATCTCAGTAAATCAGGAATCAATAATACATCATTCCCCAGGAACGTTGCTACTTCTGCTTCTCCTGTGTTATTTCATGGTTCATCACAATCTGTTGGAAATTTGTCTGACCCATATGTTGAGTGCAGGCCTGATTATCCAATTCAAGAACAGCTAAATGCCATGGGACCGAGCTCGTCTTCTCACCATCTACAGAATTCAATGGTCGATTTTCGAAATTTTCAGTCACAAGCTTCCAACAAGGATCCTGTTATTCAGGAACGCCCTTTGTTCATTCCAAGGGAAATTCAGGAAACAGGTTACAGTAATTACGCAGTTGGGATTTCTAGTGTTACAACTCAACAAGAAACAAAACCAGCAGCTTCTTTGGCAACTACTCTTTCCTCCCTACCGCCCGACCAACTGGCGCAATTAGCATCCTCTCTCCTTGGACATCAAAGGCAGTCGGGGAGCACGCCGAATGCAGCATTGCATGAAGAATTAAGGCAGCGAAACCAGGTGAATGAATCTGTTGTACAATTGGCAAGGTCCCAAAATGGTTCTTTTCAGAATAATCTGATGAACTCTGAGCCTCAGACATCTCAGTTTGTTCAAGTTCCACAGATGCATCATGTACAACAACACCAGATGTCGAATCAGATGTCGAACGTGCCAGCTGGGCAAAGAGAGATTCAGACAGGGGCTTTAGGCAATAATCAACAGGTTCAAAACTCTGATGTAGGTGGAGAATCAGAACCAGATCCACAGAAACGCCTGCAAGCGACGCTTCAGCTTGCAGCTGCTCTTCTCCAGCAAATTCATCAAGGAAAAGGAAGTTGA | 4299 | 43.68 | MGEFEDESLVSPSSLTRKNFSIEGPSHSSSLPGSTQKFCYSNMKNRVFRSIKIVVFSAKINCLMPFGPLAIVVSNLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFNKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEAVTDENYDDDDEEAPEISMWESITWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVGKGRLGVVNVLGDGPQPSTLLKTGSSEARDTNVEMSGRADGGRDRYRKDYSSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQFGELDSIAFQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKAVLTGITENVNGNLLEVISSRCKHFRVGWVYSAEESMAFDEEWSEAKEYDKPSASSRDEAYSQHREDKYLGAKGSFSQGRHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLKVDEVILRRAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAKSDSGSSNSGRNSMNVPLSPRSPHLFSNFDSGEFDSRGFNRKSNLLTSGNNAFEMKRSGEFSSKLGPSEDRYEHYGSPTKERGLHLNNFPQRFSQPSPFYDDPWDLPEDTNVYPGSKKLKTGPFPQDKELPEYPISDLEQDKRIIPKLYPDFPRSEAFDHKMKSGPPLGYKQPDQPMTMPDPYGEKSEHWREPYDNFQGPDSLPSNAVARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCFPVGKVLDMLFLMLSDLVLLVFGSCPLFKFHGILDCSLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGVILRLERPGTSARPPPYQNETKDTNFLPLHSETSYTKLPPSPAVFTPIPPSLSDLSKSGINNTSFPRNVATSASPVLFHGSSQSVGNLSDPYVECRPDYPIQEQLNAMGPSSSSHHLQNSMVDFRNFQSQASNKDPVIQERPLFIPREIQETGYSNYAVGISSVTTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQRQSGSTPNAALHEELRQRNQVNESVVQLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQQHQMSNQMSNVPAGQREIQTGALGNNQQVQNSDVGGESEPDPQKRLQATLQLAAALLQQIHQGKGS | 1432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1577782 | 1595448 | - | CmoCh02G003120.1 | Cmo02g00312 | 375909 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00312 | 1432 | Pfam | SPOC domain | 956 | 1100 | IPR012921 | - | |
Cmo02g00312 | 1432 | PANTHER | VACUOLAR CATION/PROTON EXCHANGER | 3 | 425 | - | - | |
Cmo02g00312 | 1432 | MobiDBLite | consensus disorder prediction | 637 | 659 | - | - | |
Cmo02g00312 | 1432 | MobiDBLite | consensus disorder prediction | 893 | 959 | - | - | |
Cmo02g00312 | 1432 | Gene3D | - | 470 | 567 | IPR012677 | - | |
Cmo02g00312 | 1432 | SUPERFAMILY | RNA-binding domain, RBD | 678 | 742 | IPR035979 | GO:0003676 | |
Cmo02g00312 | 1432 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 495 | 558 | IPR000504 | GO:0003723 | |
Cmo02g00312 | 1432 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 684 | 732 | IPR000504 | GO:0003723 | |
Cmo02g00312 | 1432 | Gene3D | - | 653 | 754 | IPR012677 | - | |
Cmo02g00312 | 1432 | Pfam | Sodium/calcium exchanger protein | 82 | 237 | IPR004837 | GO:0016021|GO:0055085 | |
Cmo02g00312 | 1432 | Pfam | Sodium/calcium exchanger protein | 275 | 411 | IPR004837 | GO:0016021|GO:0055085 | |
Cmo02g00312 | 1432 | MobiDBLite | consensus disorder prediction | 801 | 818 | - | - | |
Cmo02g00312 | 1432 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 3 | 425 | IPR004713 | GO:0006812|GO:0008324|GO:0016021 | |
Cmo02g00312 | 1432 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 666 | 740 | IPR000504 | GO:0003723 | |
Cmo02g00312 | 1432 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 493 | 565 | IPR000504 | GO:0003723 | |
Cmo02g00312 | 1432 | MobiDBLite | consensus disorder prediction | 796 | 875 | - | - | |
Cmo02g00312 | 1432 | CDD | RRM3_Spen | 495 | 564 | - | - | |
Cmo02g00312 | 1432 | SMART | rrm1_1 | 494 | 561 | IPR000504 | GO:0003723 | |
Cmo02g00312 | 1432 | SMART | rrm1_1 | 668 | 736 | IPR000504 | GO:0003723 | |
Cmo02g00312 | 1432 | MobiDBLite | consensus disorder prediction | 455 | 478 | - | - | |
Cmo02g00312 | 1432 | Gene3D | - | 258 | 415 | IPR044880 | - | |
Cmo02g00312 | 1432 | Gene3D | - | 110 | 253 | IPR044880 | - | |
Cmo02g00312 | 1432 | SUPERFAMILY | RNA-binding domain, RBD | 480 | 564 | IPR035979 | GO:0003676 | |
Cmo02g00312 | 1432 | TIGRFAM | caca2: calcium/proton exchanger | 49 | 414 | - | - | |
Cmo02g00312 | 1432 | MobiDBLite | consensus disorder prediction | 440 | 454 | - | - | |
Cmo02g00312 | 1432 | MobiDBLite | consensus disorder prediction | 440 | 491 | - | - | |
Cmo02g00312 | 1432 | TIGRFAM | cax: calcium/proton exchanger | 64 | 414 | IPR004798 | GO:0006816|GO:0015369 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00312 | Cmo-Chr2:1577782 | Cmo06g00700 | Cmo-Chr6:3550261 | 0 | dispersed | |
Cmo16g01015 | Cmo-Chr16:7001561 | Cmo02g00312 | Cmo-Chr2:1577782 | 1.37E-06 | transposed | |
Cmo02g00312 | Cmo-Chr2:1577782 | Cmo20g00692 | Cmo-Chr20:3416859 | 0 | wgd | |
Cmo02g00312 | Cmo-Chr2:1577782 | Cmo20g00692 | Cmo-Chr20:3416859 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00312 | - | - | csv:101216073 | 1398.26 |