Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00338 ATGGGGATTCGGTTGCTATCTTTGGTTCCTCATGCCAAGCAAATTCTAAAGATGCAGTCAAGTTTTACCAAAAACCAGTTGGACGTTCCAAAAGGTCATGTGGCTGTTTATGTAGGAGAGATCCAACGGAAGCGGTTCGTGGTTCCGATATCTTACCTAAACCATCCATCGTTCCAGAAACTGCTCAGCCACGCCGAGGAGGAGTTTGGCTTCCATCATCCACAAGGGGGCCTAACAATTCCTTGCAGAGAAGATGCCTTCGTTGATCTCACTTCTAGATTGCAAGTTTCTTGA 294 46.26 MGIRLLSLVPHAKQILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGFHHPQGGLTIPCREDAFVDLTSRLQVS 97
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1733363 1733656 - CmoCh02G003380.1 Cmo02g00338 375935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00338 97 Pfam Auxin responsive protein 12 93 IPR003676 GO:0009733
Cmo02g00338 97 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 95 IPR003676 GO:0009733
Cmo02g00338 97 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE 1 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00338 K14488 SAUR; SAUR family protein - csv:116402091 184.111
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00338 Cmo20g00780 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00338 Cmo-Chr2:1733363 Cmo02g00348 Cmo-Chr2:1749949 3.34E-68 dispersed
Cmo20g00794 Cmo-Chr20:3930792 Cmo02g00338 Cmo-Chr2:1733363 2.87E-34 dispersed
Cmo20g00801 Cmo-Chr20:3952128 Cmo02g00338 Cmo-Chr2:1733363 7.80E-46 dispersed
Cmo02g00335 Cmo-Chr2:1727300 Cmo02g00338 Cmo-Chr2:1733363 6.91E-50 proximal
Cmo02g00338 Cmo-Chr2:1733363 Cmo02g00340 Cmo-Chr2:1734203 3.20E-45 proximal
Cmo02g00338 Cmo-Chr2:1733363 Cmo20g00777 Cmo-Chr20:3905373 7.38E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g80 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00464 Cam02g0470 Cec02g0470 . Clacu02g0473 Cmu02g0467 Cre02g0801 . . . . Lsi10g00455 . Chy11g00309 Cme01g01296 . . . . . . Bma03g00588 Bma08g00770 . Cmo02g00338 Cmo20g00780 . . . . . . . . . . . . . . . . . . . . Lsi11g01165 Csa02g01336 Chy01g00714 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00338 Cmo_Chr02 FPKM 0.0 1.020895 3.580829 3.550475 0.617274 1.315428 2.315694 0.0 0.411677 0.0