Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00359 ATGAGAGGCGCAACCATACGGTGTATGGCCAATTCACGGAGGGTTAAAATGGTGTCCAAGCAGATTCAGAGGGAGCTTTCCAATATGCTTCTTACCGATAAGGTGTTGCAGTTCGCCATTCTTCCTGAGGCCTCTTTGGGAGCTGATAAGTACCTTTCGTCTCTCACTACCATCACCGATGTTGAAATCTCTAGCGACTTGCAGAATATTTTGTTTCTTTTTCGTTATGGAACTGGGAAAGAATTGAAGATTAAGGCTGATTCTATGCTTGAATATGATAGTAAGAAAGATCGTTCACCTTTCATGAGTTCACAAGTGGTTAAAGTATATGTATCCGTCTTTGGTGATGAAAGAGGAAAGGATATTGCTATGGCTGGGTTGAAATCTAAAGCTAAGTATGTTCGAAGTGTATTGGGAAAACGTATGAAGCTTCGGTTAACTCCTGAGATACGTTTTATAGAAGATGAGTCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGGATCAAAGACGAAAAAAACAATATCGATGATGAAGACATGGAGCAATCTGAACTATCTGATGCTCCTCAAGACGACCGGGATTGGGAAGAGGATGATGCTGATGAAGACATAATATACGTCGTCACTGTTCCAGTTCTTGTTCAACTTACGCTCATCTGTGCTGAGGCATCGGTTTGCCATCGCAGAGCAAGAAGTGAAGGTAAAAATGGTTCAACACCAAGCTCTGCCTCTGATTCAAAATGA 753 41.83 MRGATIRCMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDLQNILFLFRYGTGKELKIKADSMLEYDSKKDRSPFMSSQVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVVTVPVLVQLTLICAEASVCHRRARSEGKNGSTPSSASDSK 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1807861 1812160 + CmoCh02G003590.1 Cmo02g00359 375956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00359 250 TIGRFAM rbfA: ribosome-binding factor A 105 173 IPR000238 GO:0006364
Cmo02g00359 250 PANTHER RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED 4 210 IPR000238 GO:0006364
Cmo02g00359 250 Gene3D - 102 177 IPR015946 -
Cmo02g00359 250 SUPERFAMILY Ribosome-binding factor A, RbfA 9 71 IPR023799 -
Cmo02g00359 250 MobiDBLite consensus disorder prediction 180 199 - -
Cmo02g00359 250 Pfam Ribosome-binding factor A 105 167 IPR000238 GO:0006364
Cmo02g00359 250 Gene3D - 9 99 IPR015946 -
Cmo02g00359 250 SUPERFAMILY Ribosome-binding factor A, RbfA 105 171 IPR023799 -
Cmo02g00359 250 MobiDBLite consensus disorder prediction 176 199 - -
Cmo02g00359 250 ProSitePatterns Ribosome-binding factor A signature. 134 155 IPR020053 GO:0006364
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00359 K02834 rbfA; ribosome-binding factor A - csv:101215399 261.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00359 Cmo-Chr2:1807861 Cmo20g00809 Cmo-Chr20:3999264 1.66E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g60 . . . . . . . . . . Cma02g00357 . Car02g00224 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00426 . Chy11g00326 . . . . . . . . . Sed01g0251 Cmo02g00359 . . . . . . Cpe05g01299 Bhi10g01928 Tan05g1227 Cmetu11g1309 . Hepe08g0963 . . . . . . . . . . Csa02g01320 . Cme11g00451
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010825 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00359 Cmo_Chr02 FPKM 27.770391 32.748913 129.495972 133.390915 80.732872 85.950638 76.537025 383.164337 345.521759 383.987396