Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00360 ATGGCGGCCGCCGCGCTCAACCTCCCTTCTCTCTCTTCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCATCCCACACATTTCCTTCCGACCCCTCTTTCCTTCTCCTCGAAATCTCTTCCGAAATCCCACTCATTCCATTCCCATTCCCTTCCCAAACCCCTCCTCGTCGCCGTTGCCGCCGCTGCCAAATCCCCCATCTCTCACTTCTTCTCCGATGACGATTCCGACGACAAGCCGCGTGAGGAGTGCGGCGTGGTCGGAATCTACGGCGACCACGAAGCCTCTCGCCTCTGTTATTTAGCCCTCCACGCTCTCCAACATCGCGGCCAAGAAGGCGCCGGTATCGTCTCCGTCAACGACGACGTCCTTCAATCCGTCACCGGCGTTGGCCTTGTCTCTGAGGTTTTCAATCAAACCAAACTCGATCAATTACCTGGCGATTCTGCTATTGGCCATGTTCGTTACTCCACGGCTGGAGCTTCCATGCTTAAGAATGTCCAACCCTTCGTTGCTGGATATCGATTCGGCTCTGTTGGGGTTGCTCATAATGGTAATTTGGTTAATTATGGTTCTCTTAGAGCTAAACTTGAAGATTCTGGTTCCATTTTCAATACTAGTTCTGATACTGAAGTTGTTCTTCACCTTATTGCAATTTCTAAACAAAGGCCGTTCTTATTGAGAATTGTGGATGCTTGTGAACAGCTTGAAGGAGCTTATTCAATGGTGTTTATTACTGAAGATAAATTGGTAGCTGTACGTGATCCTTATGGATTTAGGCCTTTAGTTATGGGTAGGAGAAGTAATGGCTCTGTTGTGTTTGCTTCTGAAACTTGTGCTCTAGATTTAATTGAAGCCACATACGATAGAGAAGTGTTTCCTGGTGAAGTTTTGGTAGTTGATAAAAATGGGATTCAATCCCTTTGTTTAATGGCTCATCCACAGCCAAAATCATGCATATTTGAACACATATACTTTGCTCTACCGAACTCTGTTGTTTTCGGGCGTTCTGTCTACGAATCCCGCCGAGCATTCGGCGAGATACTTGCAACCGAAGCCCCTGTCGATTGTGATGTCGTGATAGCCGTACCAGATTCAGGAGTAGTAGCTGCTCTTGGCTATGCAGCCAAAGCTGGTGTTGCTTTCCAACAAGGGCTCATAAGGTCACATTACGTTGGGAGGACATTCATAGAGCCATCGCAAAGGATTCGTGACTTCGGCGTAAAGCTAAAGTTGTCGCCGGTTCGAGCAGTGTTGGAAGGGAAGAGAGTCGTGGTCGTGGATGACTCGATTGTTAGAGGCACCACATCTTCAAAGATTGTGAGGCTGTTAAAGGAAGCAGGGGCTAAAGAAGTGCATATGAGGATAGCTAGCCCTCCAATTATTGGATCATGTTATTATGGAGTTGATACCCCAAGTGCTGAAGAACTGATATCAAACAGGATGAGTGTTGATGAAATAAGAGAGTTTATTGGCTGTGATTCACTTGCTTTTCTGCCATTTGATAGCTTAACGAAGCTTTTAGGCAATGATTCTTCAAACTTTTGCTATGCTTGCTTTTCAGGGAACTACCCAGTTGAGCCAAGAGAGATCAAAGTGAAAAGGGTTGGAGATTTTGTTGATGATGGCTTGAATGGGAGCTTGGAATCCATTGATGGAGGATGGGTTCAAGCTAACAGACATCAAAATCTTGAAAATCATCTCAAAGTGGAGAAGGTTGGGGGCGTTTGA 1728 46.41 MAAAALNLPSLSSSPSPSPSLSHPTHFLPTPLSFSSKSLPKSHSFHSHSLPKPLLVAVAAAAKSPISHFFSDDDSDDKPREECGVVGIYGDHEASRLCYLALHALQHRGQEGAGIVSVNDDVLQSVTGVGLVSEVFNQTKLDQLPGDSAIGHVRYSTAGASMLKNVQPFVAGYRFGSVGVAHNGNLVNYGSLRAKLEDSGSIFNTSSDTEVVLHLIAISKQRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPYGFRPLVMGRRSNGSVVFASETCALDLIEATYDREVFPGEVLVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQRIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSAEELISNRMSVDEIREFIGCDSLAFLPFDSLTKLLGNDSSNFCYACFSGNYPVEPREIKVKRVGDFVDDGLNGSLESIDGGWVQANRHQNLENHLKVEKVGGV 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1816130 1817857 + CmoCh02G003600.1 Cmo02g00360 375957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00360 575 Hamap Amidophosphoribosyltransferase [purF]. 82 523 IPR005854 GO:0004044|GO:0009113
Cmo02g00360 575 CDD PRTases_typeI 345 456 IPR000836 -
Cmo02g00360 575 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 12 555 - -
Cmo02g00360 575 Gene3D - 342 506 IPR029057 -
Cmo02g00360 575 Pfam Phosphoribosyl transferase domain 341 452 IPR000836 -
Cmo02g00360 575 MobiDBLite consensus disorder prediction 1 24 - -
Cmo02g00360 575 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 83 306 IPR029055 -
Cmo02g00360 575 CDD GPATase_N 83 333 IPR035584 -
Cmo02g00360 575 SUPERFAMILY PRTase-like 318 529 IPR029057 -
Cmo02g00360 575 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 83 524 IPR029055 -
Cmo02g00360 575 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 12 555 - -
Cmo02g00360 575 Pfam Glutamine amidotransferase domain 163 280 IPR017932 -
Cmo02g00360 575 TIGRFAM purF: amidophosphoribosyltransferase 83 524 IPR005854 GO:0004044|GO:0009113
Cmo02g00360 575 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 83 302 IPR017932 -
Cmo02g00360 575 MobiDBLite consensus disorder prediction 7 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00360 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - csv:101203840 934.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00360 Cmo20g00810 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00360 Cmo-Chr2:1816130 Cmo03g00845 Cmo-Chr3:6692159 7.30E-08 dispersed
Cmo05g00861 Cmo-Chr5:5590808 Cmo02g00360 Cmo-Chr2:1816130 4.00E-07 transposed
Cmo02g00360 Cmo-Chr2:1816130 Cmo20g00810 Cmo-Chr20:4003731 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g59 Blo02g00658 . . Bda08g00971 . . Bma05g00406 . . . Cma02g00358 Cma20g00802 Car02g00225 Car20g00687 . . . . . . . . . . . . . . . . . Cone12ag1199 Cone8ag1246 Cone3ag1203 . Lsi10g00425 . Chy11g00327 . . . . . . . . . Sed01g0252 Cmo02g00360 Cmo20g00810 . . . . Cpe16g00281 Cpe05g01298 Bhi10g01929 Tan05g1228 Cmetu11g1361 . Hepe08g0964 . . . . . . . . . . Csa02g01318 . Cme11g00452
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00378 CST 85 241 PRT Gene Family AT1G80050 79.0 1.3e-65 246.5
Cmo12g00294 CST 33 191 PRT Gene Family AT1G80050 78.0 4.2e-64 241.5
Cmo15g01204 . 30 180 PRT Gene Family AT1G80050 74.8 3.0e-62 235.3
Cmo12g00534 CST 103 252 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cmo06g00788 . 30 145 PRT Gene Family AT1G80050 76.7 8.8e-46 180.6
Cmo16g01113 . 30 145 PRT Gene Family AT1G80050 74.1 4.4e-45 178.3
Cmo05g00147 CST 115 307 PRT Gene Family AT1G80050 54.4 1.3e-44 176.8
Cmo12g00294 CST 1 148 PRT Gene Family AT5G11160 81.8 2.0e-64 242.7
Cmo05g00378 CST 53 200 PRT Gene Family AT5G11160 81.1 2.2e-63 239.2
Cmo15g01204 . 8 145 PRT Gene Family AT5G11160 74.6 4.9e-55 211.5
Cmo06g00788 . 8 149 PRT Gene Family AT5G11160 71.8 2.7e-53 205.7
Cmo12g00534 CST 81 218 PRT Gene Family AT5G11160 71.0 3.5e-53 205.3
Cmo16g01113 . 8 148 PRT Gene Family AT5G11160 70.2 5.1e-52 201.4
Cmo05g00147 CST 81 246 PRT Gene Family AT5G11160 60.2 2.0e-48 189.5
Cmo12g00534 CST 74 256 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cmo15g01204 . 7 180 PRT Gene Family AT1G27450 73.6 4.8e-72 268.1
Cmo05g00147 CST 74 328 PRT Gene Family AT1G27450 58.4 1.4e-66 250.0
Cmo05g00378 CST 63 235 PRT Gene Family AT1G27450 69.4 2.3e-66 249.2
Cmo12g00294 CST 11 186 PRT Gene Family AT1G27450 68.2 7.4e-65 244.2
Cmo16g01113 . 7 145 PRT Gene Family AT1G27450 74.8 1.7e-56 216.5
Cmo06g00788 . 7 145 PRT Gene Family AT1G27450 74.8 4.8e-56 214.9
Cmo20g00810 CST 79 559 PRT Gene Family AT2G16570 84.5 1.1e-239 826.6
Cmo02g00360 CST 70 556 PRT Gene Family AT2G16570 83.2 3.1e-239 825.1
Cmo02g00360 CST 72 556 PRT Gene Family AT4G34740 85.0 1.2e-243 839.7
Cmo20g00810 CST 79 559 PRT Gene Family AT4G34740 85.3 7.4e-241 830.5
Cmo20g00810 CST 57 532 PRT Gene Family AT4G38880 72.9 1.1e-198 690.3
Cmo02g00360 CST 69 529 PRT Gene Family AT4G38880 73.0 2.2e-194 676.0
Cmo12g00534 CST 74 256 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cmo15g01204 . 7 180 PRT Gene Family AT1G27450 73.6 4.8e-72 268.1
Cmo05g00147 CST 74 328 PRT Gene Family AT1G27450 58.4 1.4e-66 250.0
Cmo05g00378 CST 63 235 PRT Gene Family AT1G27450 69.4 2.3e-66 249.2
Cmo12g00294 CST 11 186 PRT Gene Family AT1G27450 68.2 7.4e-65 244.2
Cmo16g01113 . 7 145 PRT Gene Family AT1G27450 74.8 1.7e-56 216.5
Cmo06g00788 . 7 145 PRT Gene Family AT1G27450 74.8 4.8e-56 214.9
Cmo05g00378 CST 85 241 PRT Gene Family AT1G80050 79.0 1.3e-65 246.5
Cmo12g00294 CST 33 191 PRT Gene Family AT1G80050 78.0 4.2e-64 241.5
Cmo15g01204 . 30 180 PRT Gene Family AT1G80050 74.8 3.0e-62 235.3
Cmo12g00534 CST 103 252 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cmo06g00788 . 30 145 PRT Gene Family AT1G80050 76.7 8.8e-46 180.6
Cmo16g01113 . 30 145 PRT Gene Family AT1G80050 74.1 4.4e-45 178.3
Cmo05g00147 CST 115 307 PRT Gene Family AT1G80050 54.4 1.3e-44 176.8
Cmo15g01204 . 5 97 PRT Gene Family AT4G22570 86.0 2.1e-43 172.2
Cmo16g01113 . 6 97 PRT Gene Family AT4G22570 87.0 6.0e-43 170.6
Cmo06g00788 . 5 104 PRT Gene Family AT4G22570 78.0 6.7e-42 167.2
Cmo12g00534 CST 80 170 PRT Gene Family AT4G22570 81.3 1.5e-38 156.0
Cmo05g00378 CST 63 152 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cmo12g00294 CST 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cmo15g01204 . 1 96 PRT Gene Family AT4G12440 83.3 2.6e-40 161.8
Cmo06g00788 . 1 96 PRT Gene Family AT4G12440 81.3 1.3e-39 159.5
Cmo16g01113 . 1 96 PRT Gene Family AT4G12440 81.3 2.8e-39 158.3
Cmo12g00534 CST 74 169 PRT Gene Family AT4G12440 78.1 2.0e-37 152.1
Cmo05g00378 CST 56 151 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cmo12g00294 CST 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cmo12g00294 CST 1 148 PRT Gene Family AT5G11160 81.8 2.0e-64 242.7
Cmo05g00378 CST 53 200 PRT Gene Family AT5G11160 81.1 2.2e-63 239.2
Cmo15g01204 . 8 145 PRT Gene Family AT5G11160 74.6 4.9e-55 211.5
Cmo06g00788 . 8 149 PRT Gene Family AT5G11160 71.8 2.7e-53 205.7
Cmo12g00534 CST 81 218 PRT Gene Family AT5G11160 71.0 3.5e-53 205.3
Cmo16g01113 . 8 148 PRT Gene Family AT5G11160 70.2 5.1e-52 201.4
Cmo05g00147 CST 81 246 PRT Gene Family AT5G11160 60.2 2.0e-48 189.5
Cmo09g01036 . 151 603 PRT Gene Family AT1G55810 85.5 2.3e-224 775.4
Cmo01g01098 . 81 537 PRT Gene Family AT1G55810 83.4 2.0e-220 762.3
Cmo11g01624 . 19 482 PRT Gene Family AT1G55810 75.1 4.2e-202 701.4
Cmo01g00411 . 19 482 PRT Gene Family AT1G55810 74.0 6.7e-200 694.1
Cmo09g01036 . 200 602 PRT Gene Family AT3G27440 77.2 1.3e-184 643.3
Cmo01g01098 . 131 550 PRT Gene Family AT3G27440 74.6 3.1e-183 638.6
Cmo11g01624 . 80 482 PRT Gene Family AT3G27440 75.4 1.1e-180 630.2
Cmo01g00411 . 80 482 PRT Gene Family AT3G27440 74.4 6.7e-178 620.9
Cmo11g01624 . 1 482 PRT Gene Family AT3G27190 86.5 1.1e-248 856.3
Cmo01g00411 . 1 482 PRT Gene Family AT3G27190 85.5 2.8e-244 841.6
Cmo09g01036 . 138 602 PRT Gene Family AT3G27190 72.9 3.7e-204 708.4
Cmo01g01098 . 68 536 PRT Gene Family AT3G27190 72.7 4.8e-204 708.0
Cmo03g00417 . 4 289 PRT Gene Family AT3G53900 66.0 7.4e-107 384.4
Cmo09g01036 . 136 603 PRT Gene Family AT4G26510 83.4 2.2e-230 795.4
Cmo01g01098 . 66 537 PRT Gene Family AT4G26510 82.3 6.4e-230 793.9
Cmo11g01624 . 7 482 PRT Gene Family AT4G26510 76.1 1.2e-212 736.5
Cmo01g00411 . 11 482 PRT Gene Family AT4G26510 75.0 2.5e-210 728.8
Cmo11g01624 . 1 482 PRT Gene Family AT5G40870 86.5 8.4e-249 856.7
Cmo01g00411 . 1 482 PRT Gene Family AT5G40870 85.9 1.1e-243 839.7
Cmo09g01036 . 179 605 PRT Gene Family AT5G40870 78.9 8.2e-204 707.2
Cmo01g01098 . 68 539 PRT Gene Family AT5G40870 71.5 3.1e-203 705.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00360 Cmo_Chr02 FPKM 47.872875 48.048683 32.472099 30.680759 46.226585 45.338573 44.195026 33.430656 34.625782 34.355148