Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00371 ATGGCGGAGCATTCGCTCTCTCTCGCTCCGATCCATTTCCAGGCACCAAAGATGTCTTTCAGAACCCTCCATTGTCCTTCTTCAATCGCTGCTCGAATCCATATCCCTAGAGTTCTCGGACCATTCCCTCGCCGTTCCTTTCCCTTCTCCCGCCATTCTTTCTCCACCACCACCACCTCCCCTTTATCCGTCGATGTATCGCCGCGGGTTCGCCGTCGGTTCGCGGTTCCTCGCGATAATCAGGAGCGGGAAGGCAGTAATGAGATTGACAATGAAGTGCAGGAAAATGAGCAGTTATTGGGGATTGGAAGAGAAGAATTGGGGATCCAAGGGTTGTTGAGTCAGATGAAGGAGATTGTAACTTTTACTGGTCCGGCTATTGGATTGTGGATCTGTGGACCGTTGATGAGTCTCATTGACACTGCGGTTATTGGCCAGGGGAGCGCTGTTGAGCTTGCTGCTTTGGGCCCAGCGACAGTTTTATGTGATTATACGAGCTTTGTGTTCATGTTTCTTAGTATTGCAACTTCAAATATGGTAGCCACGGCCCTTGCCAAACAGGATAAAAACGAAGTGCAGCATCACATATCTACATTGCTATTTGTTGGGTTGGTATCTGGTTTTTTGATGCTCTTAGCTACCAAACTATTGGGTTCAGTGGCGCTAACTGCTTTTGTGGGGACAAAGAATGCAAACATCATACCTGCTGCAAACACGTATATGCAGATTCGTGGTTTGGCATGGCCCGCAGTTCTCACTGGATGGGTTGCGCAGAGTGCAAGTCTTGGCATGAAAGATTCCTGGGGACCGTTGAAGGCTTTGGCAGTTGCGAGTATTGTAAATGGCATAGGTGATATTGTTCTATGCATGTTTTTAGGATATGGTATAGCTGGTGCTGCATGGGCAACTATGGCATCACAGGTTATTGCAGCTTATATGATGATAGAATCACTGAACAAGAAAGGATACAGTGGATATTCTCTGTCTATTCCCTCACCTGCTGAATTCTTGTCAATACTTGCACTTGCTGCTCCTGTATTTATGACAATATTGTCAAAGGTGGGCTTTTATTCTCTCCTCATCTATTATGCTACGTCTATGGGCACACACACCATGGCTGCTCATCAGGTCATGAATCAAATATTCTACATGTGTAGCATATTGGGTGAACCTCTTTCTCAAACTGCTCAGGCATTCATGCCTGGGTTGATAACTGGAGTGAATCGTAGTTTTGATAAGGCTCGGATGCTGCTCAAGTCACTCTTGATCATAGGAGCTATCTTTGGTTTGGTCTTAGGGACTATTGGAACATCAGTTCCTTGGTTGTTCCCTAATCTCTTTACGCCCGATAAGAAGATTATTCAAGAGATGCATAAAGTGTTGATTCCATATTTCTTGGCGCTAGTCATAATGCCCGCAACCCTTAGCTTAGAAGGGTCATTATTGGCTGGACGAGACCTAAAATTCATTAGTTTGTCAATGTGTGGATGCTTTTCTCTTGGTGCCATTCTATTGCTGTTTATAAGCAGTTGGGGCTATGGTTTGGGGGGCTGCTGGTTCGCCCTCGTCGGATTTCAATGGGCTCGGTTTCTTAACGCTCTTCGGCGTGTCCTCTCTCCCAATGGAGTGCTTTACTCCAGTGGTTTAAGCCACCATGAAGTGGTCAAGCAAAAGGCTTCATAG 1683 46.11 MAEHSLSLAPIHFQAPKMSFRTLHCPSSIAARIHIPRVLGPFPRRSFPFSRHSFSTTTTSPLSVDVSPRVRRRFAVPRDNQEREGSNEIDNEVQENEQLLGIGREELGIQGLLSQMKEIVTFTGPAIGLWICGPLMSLIDTAVIGQGSAVELAALGPATVLCDYTSFVFMFLSIATSNMVATALAKQDKNEVQHHISTLLFVGLVSGFLMLLATKLLGSVALTAFVGTKNANIIPAANTYMQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALAVASIVNGIGDIVLCMFLGYGIAGAAWATMASQVIAAYMMIESLNKKGYSGYSLSIPSPAEFLSILALAAPVFMTILSKVGFYSLLIYYATSMGTHTMAAHQVMNQIFYMCSILGEPLSQTAQAFMPGLITGVNRSFDKARMLLKSLLIIGAIFGLVLGTIGTSVPWLFPNLFTPDKKIIQEMHKVLIPYFLALVIMPATLSLEGSLLAGRDLKFISLSMCGCFSLGAILLLFISSWGYGLGGCWFALVGFQWARFLNALRRVLSPNGVLYSSGLSHHEVVKQKAS 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1884655 1891663 + CmoCh02G003710.1 Cmo02g00371 375968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00371 560 CDD MATE_DinF_like 115 531 IPR044644 -
Cmo02g00371 560 MobiDBLite consensus disorder prediction 75 94 - -
Cmo02g00371 560 Pfam MatE 129 283 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo02g00371 560 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 79 549 - -
Cmo02g00371 560 MobiDBLite consensus disorder prediction 75 90 - -
Cmo02g00371 560 TIGRFAM matE: MATE efflux family protein 125 519 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo02g00371 560 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 79 549 IPR044644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00371 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101207199 853.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00371 Cmo-Chr2:1884655 Cmo03g00336 Cmo-Chr3:4462918 1.45E-16 dispersed
Cmo02g00371 Cmo-Chr2:1884655 Cmo02g00372 Cmo-Chr2:1892468 0 tandem
Cmo02g00371 Cmo-Chr2:1884655 Cmo20g00822 Cmo-Chr20:4069564 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g24 . . Bda06g00961 . . . . Bma12g00541 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00412 . . . Blo04g00535 . . Bda14g00576 . . Bma03g00570 . Sed01g0265 Cmo02g00371 . . . . . Cpe16g00272 Cpe05g01288 Bhi10g01946 Tan05g1243 Cmetu11g1869 . Hepe08g0979 . . . . . . . . . . Csa02g01304 . Cme11g00165
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002254 2 5 2 3 2 2 2 2 2 1 1 2 2 1 2 3 2 2 2 2 2 1 2 2 2 1 1 4 4 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00371 Cmo_Chr02 FPKM 88.93679 96.216446 59.944252 60.284126 17.375925 17.301563 16.310143 73.184509 73.925743 74.550652