Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00381 ATGGCTACTTACTATTCTAGTTCGAGTAATGGAAGGGAGGCTACTCCTATCCTCTACTCGAGAGGAGCTTTGATCGGTTCATATGAAGACTCGTCGATTCTTCCCCGGAATATGATGATGCATAATTCTGGGATGTACATGGATTCATGTCCTTCACCGGGAGACAATGGTTGTGGTCAGATAACGTCGGTTGGAGCAGCGGGAACGAGCCAACAACAGCAGGAGTTTTTGTCGAACCTCGGTGGTTCGGAGATTGCTGAGCATGATTTCGATACATGGAGAGGAGAGGGAAGGAGTGAAATGGTTGGTGCGAGCTCGATGCGTGGCCCGACCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGGTTATCCCTTACTCTTAGTACACAAATTCCATCTGGAATTCAAATGCCTTCAATTCCTTATAGGAATTCGGATATGGGTTTAGCTTCGTTCTTGAGTCCGAATCCGACCAGTTCAGGCGACGATGGCTGCAGAAATGGCAGTTCTAGAGACGAGCAGTTGGCAAAGGGGGAATTATCTCAATACAGTATGTCTACGATTGCGAGAACGATGCCGAACTCGAAGTACCTTAAGGCAGCACAACAACTCCTTGATGAAGCTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGCTCACATGAGCATGAAACTAGAAGTGGAAAGAATGGTGATGCAGGAACCAAAAACGACGGTTCGATGCTCACTGCAAGCGGAGCGTCTTCGAACCCTCAAGAAACTGGAAGCAATTCAACTTGTGAGCTCTCTCATGCTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTAATATACTCTCTTATATTCTCTAGATTAGATGAACACATTCGATTCGGTTTTCGGTTGAAATGGTTTGTGGCACCGACTTATTCCGAAGTACGAGCTCAAGGTGAACTGGTTGATAGAAGGTACAATCAGTATTACCATCAAATGCAGATTGTGGTATCATCATTTGATGTTATAGCAGGATGTGGGGCGTCTAAGCCATATACTGCACTTGCACTCCAGACTATATCTCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTTCGAGCTACCCGTAAAAGCCTGGGAGAGCATGAGAATTCTGGAAATGACAAAGGAGTTGGAATCACCCGTCTCCGGTACGTCGACCAGCAGTTAAGGCAACAAAGGGCTCTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCGATTCTTCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGACTCTGATAAGATCATGTTGGCAAGGCAAACAGGATTGACTAGAAGTCAGACCAAACCTTGTATGTCTGAAAAGATGTGTCTGCTGGAAGTAGGTACATGTCGTGGAGGCTGCCGATTTAGCTCCATTTTATTTCTCCACCATGTCTATATTTACCTCGAGTTTTGTTGTACTGACATGTGTATCGATATTAAATTTGATGTTGTCGATGGGCTTGTGCAGGTCTCTAATTGGTTTATCAATGCACGCGTGCGTCTTTGGAAACCTATGGTAGAGGAAATGTACAAGGAAGAGGCAGGCAGTGCAGAAATGGACTCTATATCTTCATCTGAAAATGTTGGCAAGGGAACAAAAGGAGATAACAGGACCTTTGAGGATAATAAGGAGGAGGATCTGCAACAAAGTACAAGTTCAACAGCCACCGAAAGATGTAGCGCTGGAGACATTATCGACTTAAAATCCGATCAGGCCTCTAATCTTGGAAATTCAGGTTCCACCAGACTAGCTAGTTTCCAAAATGGTGCTCACATCGAAGCTCAAAACGAGCTGGTAAAGTCGAGGGAGGAGCTAAGGCCTAATGTAAATAACTCTAATTTCTTTCCTGATGCAATTGTCCAGTCTCAGGCAGGAAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAACTGGGAAGGTTCGGGGCGGTTAGTGGGGTATCGCTTACACTGGGCTTACAGCATTGTGAGGGTGGTGGCATACCTATGCCCACTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGAAATGTACAATGCTGCAGCGTCTTCTCTCGGGGACACAGGCCATTTTGAATGCGTAAACGCTGGTAATCCGCAACCGAGGTTCGGCCCTTCTCATCTTTACCATGATTTTGTTGTTGTATCAGTGGTTTCTGAAATCAAGAAAGTAACAATTAGTCACTTTGAGCATACCTCAATCGATAAAAACACG 2358 45.59 MATYYSSSSNGREATPILYSRGALIGSYEDSSILPRNMMMHNSGMYMDSCPSPGDNGCGQITSVGAAGTSQQQQEFLSNLGGSEIAEHDFDTWRGEGRSEMVGASSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSGIQMPSIPYRNSDMGLASFLSPNPTSSGDDGCRNGSSRDEQLAKGELSQYSMSTIARTMPNSKYLKAAQQLLDEAVNVRKALKRPNNERNQSSHEHETRSGKNGDAGTKNDGSMLTASGASSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVIYSLIFSRLDEHIRFGFRLKWFVAPTYSEVRAQGELVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQTKPCMSEKMCLLEVGTCRGGCRFSSILFLHHVYIYLEFCCTDMCIDIKFDVVDGLVQVSNWFINARVRLWKPMVEEMYKEEAGSAEMDSISSSENVGKGTKGDNRTFEDNKEEDLQQSTSSTATERCSAGDIIDLKSDQASNLGNSGSTRLASFQNGAHIEAQNELVKSREELRPNVNNSNFFPDAIVQSQAGSDRFMAAAAAYHMSELGRFGAVSGVSLTLGLQHCEGGGIPMPTGTHHGFAAMRGDEMYNAAASSLGDTGHFECVNAGNPQPRFGPSHLYHDFVVVSVVSEIKKVTISHFEHTSIDKNT 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1948698 1951670 + CmoCh02G003810.1 Cmo02g00381 375978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00381 786 MobiDBLite consensus disorder prediction 576 590 - -
Cmo02g00381 786 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 532 713 - -
Cmo02g00381 786 MobiDBLite consensus disorder prediction 557 601 - -
Cmo02g00381 786 Pfam Associated with HOX 195 379 IPR006563 -
Cmo02g00381 786 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 76 292 - -
Cmo02g00381 786 MobiDBLite consensus disorder prediction 218 271 - -
Cmo02g00381 786 MobiDBLite consensus disorder prediction 218 239 - -
Cmo02g00381 786 MobiDBLite consensus disorder prediction 561 575 - -
Cmo02g00381 786 MobiDBLite consensus disorder prediction 151 167 - -
Cmo02g00381 786 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 329 475 - -
Cmo02g00381 786 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 329 475 - -
Cmo02g00381 786 Gene3D - 425 561 - -
Cmo02g00381 786 CDD homeodomain 430 477 IPR001356 GO:0003677
Cmo02g00381 786 MobiDBLite consensus disorder prediction 240 271 - -
Cmo02g00381 786 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 292 - -
Cmo02g00381 786 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 532 713 - -
Cmo02g00381 786 SMART prehox3 188 380 IPR006563 -
Cmo02g00381 786 SMART HOX_1 430 551 IPR001356 GO:0003677
Cmo02g00381 786 SUPERFAMILY Homeodomain-like 431 477 IPR009057 -
Cmo02g00381 786 MobiDBLite consensus disorder prediction 139 181 - -
Cmo02g00381 786 Pfam Homeobox KN domain 447 543 IPR008422 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00381 - - - csv:101205137 753.051
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00381 Cmo20g00834 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00536 Cmo-Chr1:2636510 Cmo02g00381 Cmo-Chr2:1948698 1.13E-64 dispersed
Cmo02g00381 Cmo-Chr2:1948698 Cmo06g00525 Cmo-Chr6:2534813 1.84E-83 dispersed
Cmo02g00381 Cmo-Chr2:1948698 Cmo20g00834 Cmo-Chr20:4158381 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g4 . . . . . . Bma05g00433 . . . Cma02g00374 Cma20g00823 Car02g00241 Car20g00709 . . . . . . . . . . . . . . . . . Cone12ag1171 Cone8ag1218 Cone3ag1223 Cone10ag1108 Lsi10g00402 . Chy11g00350 . . . . . . . . . Sed02g0459 Cmo02g00381 Cmo20g00834 . . . . Cpe16g00265 Cpe05g01281 Bhi10g01966 Tan05g1259 Cmetu05g0753 . Hepe08g0990 . . . . . . . . . . Csa02g01292 . Cme11g00154
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010110 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00381 Cmo_Chr02 FPKM 0.0 0.36463 1.509419 0.0 2.010479 2.388713 4.149364 1.685442 0.0 0.0