Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00384 ATGGGGTCTGTTTGTTGTGTTGCGGCTAGGGACAAGACTATAGTTAGTGGATCTGGGAGTGAAACCTTATGTAGGAATATAAGGTATTCGCCTAATTGGAGCTTTCGATGGGATAATCGTGGACGGGTAGCAGGTGAAGAGACTTCAATAAGTTGGTTTTCTGATAGTGTTAGCCGCAATGATAGAGTGGAGCCGAAGTGTGAGTCAGCATATGCGTCTGAGGATGGAAGTCCATTCGAACATCTCCGTAGACGACGTACATGGCAAAAATCCCCACCGCCAGAAGGCACAACTAATAGTTTAAGAACTCCTAGTTCAGGTCAATCAAATTCAAGGAATTTATCGATAGATGCGAGTCTAGAACAGGTGAAGGAGGCTACAGAATCTCCCGCAGCTTCATATAAGTCTCCTGCAAATTTGTCACTTTCATTGCCTTCAGCTTCATCTTTGTCAACATCTCCTTTGTCATCACAGAGTTATTTGCCTCCAACTAATTCATCCCTAACAAGGTGTTCCCATCGATCCCCAGGACATCAGCTGTTGCGTCAAGTGTCTGACGGCCGAATCCGAGGATTAAAATCCCCAAGTAGCTATTTAGCTTTTGATGATAGACAAAGGCTTCCCTCTTGGAGCAATGAATCGGTCCGGGAATCACATGGAGGGTCTTCAGATTGTTGGTCTGTACATGCTTTCTCAGAACTCATGGCCACTTCTCATAGAGAAAGGTGGTCTTTTGATAGTGACTCTTTTGGCTTTAACGGTGAAAAAATAGGCAGATCTAGTAGTCAATTTTCAACTTCCTCAGTTGATTTGCAAACTTGCGGAGTTTGCTTGAAGCTGTTGACCGAGAAATCCTCGTGGAGTAGCCAAAGGATTATTGCTAACAATGAACTTTCTGTTGCTGCTATACTAACCTGTGGACATGTTTATCATGCCGATTGCTTGGAGAGTATGACACCTGAAATTCACAAGTACGACCCCGCTTGTCCAGTTTGTACCTTCGGGGAGAAGCATACGCAGAAGCTATCCGAGAAGGCGCTTAAAGCTGAAATGGACTGGAAGAGTCTATACAAGAGATCCAAAAACTGTATTGCAGATGGTGGTTTTGATGGTGATTATACTGCAAACGATCCTTTCAAAAACAATCCACGTCTTGAAAGAGGTTCCAAAATGTCTGCCAGTTCTAGCATGAGAAGCTCCTCAGGAAAGCCTTTCTTGAAACGGCACTTCTCCTTTGGCTCAAAGGGATCGTCTAGAATGATGTCCGATAACCACTCCACGAGAAGGAAAGGATTTTTCTGGACAAAATCTAGCAAAATATGA 1323 43.84 MGSVCCVAARDKTIVSGSGSETLCRNIRYSPNWSFRWDNRGRVAGEETSISWFSDSVSRNDRVEPKCESAYASEDGSPFEHLRRRRTWQKSPPPEGTTNSLRTPSSGQSNSRNLSIDASLEQVKEATESPAASYKSPANLSLSLPSASSLSTSPLSSQSYLPPTNSSLTRCSHRSPGHQLLRQVSDGRIRGLKSPSSYLAFDDRQRLPSWSNESVRESHGGSSDCWSVHAFSELMATSHRERWSFDSDSFGFNGEKIGRSSSQFSTSSVDLQTCGVCLKLLTEKSSWSSQRIIANNELSVAAILTCGHVYHADCLESMTPEIHKYDPACPVCTFGEKHTQKLSEKALKAEMDWKSLYKRSKNCIADGGFDGDYTANDPFKNNPRLERGSKMSASSSMRSSSGKPFLKRHFSFGSKGSSRMMSDNHSTRRKGFFWTKSSKI 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1969171 1972690 - CmoCh02G003840.1 Cmo02g00384 375981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00384 440 Pfam Zinc finger, C3HC4 type (RING finger) 274 332 IPR018957 GO:0046872
Cmo02g00384 440 ProSiteProfiles Zinc finger RING-type profile. 274 333 IPR001841 -
Cmo02g00384 440 MobiDBLite consensus disorder prediction 380 402 - -
Cmo02g00384 440 SMART ring_2 274 332 IPR001841 -
Cmo02g00384 440 MobiDBLite consensus disorder prediction 145 179 - -
Cmo02g00384 440 MobiDBLite consensus disorder prediction 387 402 - -
Cmo02g00384 440 MobiDBLite consensus disorder prediction 69 113 - -
Cmo02g00384 440 MobiDBLite consensus disorder prediction 145 187 - -
Cmo02g00384 440 SUPERFAMILY RING/U-box 273 333 - -
Cmo02g00384 440 PANTHER EXPRESSED PROTEIN 1 434 - -
Cmo02g00384 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 334 IPR013083 -
Cmo02g00384 440 PANTHER BNAA09G43140D PROTEIN 1 434 - -
Cmo02g00384 440 MobiDBLite consensus disorder prediction 91 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00384 - - - csv:101206081 776.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00384 Cmo-Chr2:1969171 Cmo18g01158 Cmo-Chr18:11783071 1.99E-16 dispersed
Cmo02g00384 Cmo-Chr2:1969171 Cmo20g00837 Cmo-Chr20:4178136 5.04E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g344 . . . . Bpe07g00416 . . Bma12g00499 . . Cma02g00378 Cma20g00829 Car02g00245 Car20g00714 Sed05g2310 . . Bhi05g01247 Tan02g0782 Cmetu01g1358 . . . . . . . . . . . . . . . Lsi10g00395 . Chy11g00356 . Blo04g00522 . Bda15g00059 . . . . . Sed01g0284 Cmo02g00384 . . . . . Cpe16g00260 Cpe05g01277 Bhi10g01975 Tan05g1268 Cmetu11g0620 . Hepe08g0995 . . . . . . . . . . Csa02g01285 . Cme11g00139
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00384 Cmo_Chr02 FPKM 1.171286 1.025128 0.227466 0.269621 0.0 0.0 0.32315 3.829091 4.30968 3.302398