Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00389 ATGTCTGGACCCTTGGATCGATTTGCCAGACCATGCTTTGAAGGGTTCTCTGGAAGTGATGAAAGAAAAGAAAGAAAATCTGATTTTGAAAACTCGGAGGATGAAAGGAGGACGAGAATTGGATCTATAAAGATGAAAGCGTTAAATGCATCCTCCAAATTCAAACATTCCCTAAAGAAGAAGAGCAGTAGGAGAAAAAGTGATGGTCGGGTCAGTTCCGTTTCTATTGAGGATGTTAGGGATGTTGAGGAGCTGCGGGCTGTTGATGCATTTCGTCAAGCACTAATAATGGAAGAATTGCTGCCAGAAAAACATGATGATTATCACATGATGTTGAGAAGGTCCTTTCTTCATTTTATTGCTAATACATGGTTAAATGAACAAAAATCTATTACTGCTTTGAATTTCTTGGAGATTGGTTTTATTCCGATTGGATTTTGTATAATGCAAAAAGCGAACGTCCTTCTGAAAAAAGACAGCTTCACTCATGCTAGATCGTTAGCAAATTTCGAATGCAGTTGCAGCCTTTATACATATTTTTCTTCATCTTCTTGTTATGCCTCAAATTACTGCCCTTTGACTCTTTTTCCCACCCCTGCTTTAAGAGGTGCGTGGAGGCCTACTCCGATGATTCATAAGTTCAAAAGAATTCTTTTAATTATATTTGTGCCCTTTGTCTCACATAGGCTTATAAGAGCTTTGTGCTCAGTATCCATGGAGCTTTCGTGCCTTCGAAAAGCATTGTTTCAACTTCATGATATCCTGACTTCTCGAACTCGGAAATTTGATGTCGAGAAAGCAAAACATATGTGGGCTGATATGCTTCAGTGGAGGAAGGAGTTTGGTGTTGACACAATCGGTGAAGACTTTGACTTCGTGGAGAAAAATGAAGTTCTGAGGTATTATCCTCATGGTTATCACGGGGTGGATAAAGAAGGAAGGCCTATTTACATCGAAAGGTTGGGGAAAGTGGATCCGAACAAACTTATGCAAGTGACAACTATGGATCGATATATAAAGTACCACATTCAAGAGTTCGAGAAGAGTTTTGCTATGAAGTTTCCAGCCTGTTCTATTGCTGCAAAGAGGCACATAGATTCAAGCACCACAATTTTAGATGTCCAAGGCGTGGGCCTCAAGAATTTCACCAAGTCTGCTCGGGAATTAATCATGCGGCTGCAGAAAGTTGATGGCGACAATTACCCAGAAACGCTCAGCCAAATGTACATTATCAATGCTGGTCCTGGATTCCGGATGCTGTGGAACACCGTGAAGTCTTTCCTTGACCCCCGAACGACATCTAAAATTCATGTTCTCGGAAACAAGTACCAAAGTAAGTTACTTGAAATAATTGATTCCAGTGAGTTGCCCGAATTTCTGGGTGGAAGTTGTACCTGCGCCGATGTGGGGGGATGTCTTCGATCAGACAAGGGGCCATGGAGAAACCCAGAAATTGAAAAGATGATTCTTAATGGTGAAGCACGACGGGCCAGACAGGTCGTAAAAGTTCTAAATAGTGAAGGGAAGGTTGTTGCATATGCCAAGCCACATTACCCAATGGTGAAAGGTAGCGATACATCCACTGCCGAGTCAGGATCCGAAGCTGAAGAGATCGCTTCGCCTAAAGCAATGAAGAGCTATTCTCATCTTCGGTTGACCCCTGTTCGGGAAGAAGCACGAGTCGGCGGGAAAGGAGGCTTTGCCGCTACCTTCTCCGGGTATGATGAGTATGTTCCCATGGTTGACAAAGCTGTCGATGCTGAATGGAAGAAGCAGGTTTCACTCCAACGACCTAATGCCTTGAAAGGGGTTCTTCCACTGCCCGACACCCAAAAAACATCCGAAGCGCTTCACACTCGAATGTTGGTAGTATTCATGGGCTTCTTTATAGCCATTTTGGCGTTCCTACGTTCACTAGCATGCCGGATAAGCGGGAAGAAGTTGTGTACCGGTAGTCAAAACACCACTCCAGACTTGTCCCATGACAAAACAGGAACGAAGGAGAATTGCCCCCCTTCACCAATTGCTAAGGTTACAGAAGCAGAACTCCTCTCTAATGTAATGAAGAGGTTGGGTGAGCTGGAGGAGAAGGTCGACACGCTCCAATCAAAACCATCCAAAATGCCATATGAGAAAGAGGAACTATTGAACGCTGCCGTCTGCCGTGTGGATGCGTTAGAAGCAGAGCTTATCGCTACCAAGAAGCTAGCCACGATATTCTTATATGGGTCGTTTTGTGTTCCCGTGACCCTTTTCCTACAGTCAGTCATTTGTCTTGTTGGGTCGTCTGAAAATGCTTTGCATGAAGCATTGATGAGGCAGGAAGAACTACTTGCTTACATTGATAGCCAAGAGGAAGCAAAGTTGCGGACGAGTTTAACAAATGTGGGGTCAGATAAAGATAACAAGCATTTGGATCGTAAAGCTATGCTCGAAAAACACAAACTTCCAACTTCCAAAAGATAA 2466 43.47 MSGPLDRFARPCFEGFSGSDERKERKSDFENSEDERRTRIGSIKMKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELRAVDAFRQALIMEELLPEKHDDYHMMLRRSFLHFIANTWLNEQKSITALNFLEIGFIPIGFCIMQKANVLLKKDSFTHARSLANFECSCSLYTYFSSSSCYASNYCPLTLFPTPALRGAWRPTPMIHKFKRILLIIFVPFVSHRLIRALCSVSMELSCLRKALFQLHDILTSRTRKFDVEKAKHMWADMLQWRKEFGVDTIGEDFDFVEKNEVLRYYPHGYHGVDKEGRPIYIERLGKVDPNKLMQVTTMDRYIKYHIQEFEKSFAMKFPACSIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMRLQKVDGDNYPETLSQMYIINAGPGFRMLWNTVKSFLDPRTTSKIHVLGNKYQSKLLEIIDSSELPEFLGGSCTCADVGGCLRSDKGPWRNPEIEKMILNGEARRARQVVKVLNSEGKVVAYAKPHYPMVKGSDTSTAESGSEAEEIASPKAMKSYSHLRLTPVREEARVGGKGGFAATFSGYDEYVPMVDKAVDAEWKKQVSLQRPNALKGVLPLPDTQKTSEALHTRMLVVFMGFFIAILAFLRSLACRISGKKLCTGSQNTTPDLSHDKTGTKENCPPSPIAKVTEAELLSNVMKRLGELEEKVDTLQSKPSKMPYEKEELLNAAVCRVDALEAELIATKKLATIFLYGSFCVPVTLFLQSVICLVGSSENALHEALMRQEELLAYIDSQEEAKLRTSLTNVGSDKDNKHLDRKAMLEKHKLPTSKR 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2003406 2009757 + CmoCh02G003890.1 Cmo02g00389 375986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00389 821 MobiDBLite consensus disorder prediction 16 42 - -
Cmo02g00389 821 MobiDBLite consensus disorder prediction 797 821 - -
Cmo02g00389 821 Gene3D - 282 492 IPR036865 -
Cmo02g00389 821 MobiDBLite consensus disorder prediction 794 821 - -
Cmo02g00389 821 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 3 113 - -
Cmo02g00389 821 SUPERFAMILY CRAL/TRIO domain 297 488 IPR036865 -
Cmo02g00389 821 SMART sec14_4 294 465 IPR001251 -
Cmo02g00389 821 MobiDBLite consensus disorder prediction 1 70 - -
Cmo02g00389 821 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 258 736 - -
Cmo02g00389 821 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 763 790 - -
Cmo02g00389 821 Coils Coil 684 704 - -
Cmo02g00389 821 CDD SEC14 295 462 IPR001251 -
Cmo02g00389 821 MobiDBLite consensus disorder prediction 652 672 - -
Cmo02g00389 821 Pfam CRAL/TRIO domain 300 462 IPR001251 -
Cmo02g00389 821 SUPERFAMILY CRAL/TRIO N-terminal domain 258 289 IPR036273 -
Cmo02g00389 821 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 113 - -
Cmo02g00389 821 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 294 468 IPR001251 -
Cmo02g00389 821 Gene3D - 258 281 - -
Cmo02g00389 821 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 258 736 - -
Cmo02g00389 821 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 763 790 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00389 - - - cmo:103499694 898.271
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00389 Cmo20g00842 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00389 Cmo-Chr2:2003406 Cmo20g00843 Cmo-Chr20:4240374 2.14E-27 dispersed
Cmo02g00389 Cmo-Chr2:2003406 Cmo02g00390 Cmo-Chr2:2009831 5.88E-23 tandem
Cmo17g01233 Cmo-Chr17:9785017 Cmo02g00389 Cmo-Chr2:2003406 1.48E-118 transposed
Cmo02g00389 Cmo-Chr2:2003406 Cmo20g00842 Cmo-Chr20:4232680 1.70E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g350 . . . . . . . . . . Cma02g00383 Cma20g00834 Car02g00248 Car20g00720 . . . . . . . . . . . . . . . . . Cone12ag1162 Cone8ag1211 Cone3ag1175 Cone10ag0981 Lsi10g00391 . Chy11g00362 Cme01g01117 Blo04g00520 . . . . . . . Sed01g0288 Cmo02g00389 Cmo20g00842 . . . . Cpe16g00256 Cpe05g01274 Bhi10g01981 Tan05g1280 Cmetu11g2218 . Hepe08g0999 . . . . . . . . . . Csa02g01281 . Cme11g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004434 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00389 Cmo_Chr02 FPKM 0.923366 1.089239 6.359865 4.955988 1.416065 1.285844 1.700124 1.140574 1.331547 1.334276