Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00390 ATGTCCGACCCCGCGCCAGACCCTCAGCCCAAAGGTGGCAACGAAGCTGAGATGTCGGAGGAAGATAGAAAGATAAGGCTTGCATCTCTTAAGCAGAAAGCGATCAGTGCCTCAAACAAATACAAACTTTCAATGAAGAAACGAGGTAGGAGAAACAGCAGCAGAGTGATGTCTATCTCAATTGAAGACGACATCGACGCAGAAGAATTACAAGCAGTTGATGCCTTCCGCCAAGCTCTGATATTGGAAGAGCTCCTCCCTGCCAGACATGATGATCATCACATGATGCTCAGATTCTTAAAGGCTAGAAAGTTTGATTTTGACAAGACAAAGCAAATGTGGACTGACATGCTTCAATGGAGGAAAGAGTTCGGATCCGACACAATCATGGAGGAGTTTGAATTCAAGGAAGTTGATGAAGTGTTGAAGTACTATCCACAAGGGCATCACGGAGTCGACAAGGATGGACGGCCTGTGTACATCGAACGACTCGGGCAAGTCGATTCCACCAAGCTCTTGGAGGTGACGACCATGGATAGATACATCAATTACCATGTCCGAGAGTTTGAGAGGACGTTTGTTTTGAAGTTCCCAGCTTGCACCATTGCAGCTAAGAAGCACATTGATCAAAGCACGACCATCTTGGATGTCCAAGGAGTGGGACTGAAAAACTTCAACAAATCTGCTAGGGAGCTTATCCAGAGGCTGCAGAAGATTGATGGTGACAACTATCCAGAGACTTTGAACAGAATGTTCATCATCAACGCTGGATCTGGATTTAGGCTGCTGTGGAACACTGTGAAATCATTCCTTGACCCAAAAACGACAGCTAAAATCCATGTTCTTGGCAATAAGTATCAGCCCAAGTTGCTGGAGATCATTGATGCCAGTGAACTTCCGGAGTTCATTGGAGGTACTTGCACCTGTGCTGACAAGGGTGGCTGCATGAGATCCGACAAGGGACCATGGAACGACCCAGAAATTGCCAAGGCAAGTGGTTCATTCAAGGCAGAAGCAGCTCCTGTGGCAGCTGCAGCACCAGCTGTTGAATCAGGCATGTCCCCAAAGCAATCAAAATCAACCCCTATCATTCAAGAAGTTCCATCAGGCAGAAAGTATGGCGGTGAGTATCAACAATATGGTCAGTTCATGCCAGTGGTGGACAAAGCCGTGGATCCAAGTTGGGCACTTTCAAGTGAGAAATATGGTCTTTCCAAAGATCCATTTGCTCATGAAAACTACAAAGTCCCGGAAGGGTTCAGCAACCAAATAGTTGGGGGAATAATGGCTTTGGTGATGGGAATAGTGACCATGGTCCGGCTGACAAGAACCATGCCAAAGAAGCTCACTGAGGCAGCCATCTATAGCAGCACCGTCTACTACGATGGTTCGATGGCGAACCGTCCAGCATTACCGTCCCCCGCCGCGGTGCCTCTGAGCGATTACATGACGATGATGAAGCGTATGGCGGAGCTAGAAGAGAGGATCAATGTTCTCAACATGCAGCCGGCAGTGATGCCAGCTGATAAGGAGGAAATGCTCAACATTGCTTTAGGGAAAGTTGAAACTTTGGAACAAGAGCTAGACACAACCAAGAAGGCACTCGAGGAATCTCTTGCTCGAGAAGCCGAGCTGACCGACTACATCGAGAAGAAGAAGAAGAAGAAGATGGTGAACCCATTCCGCTGGTGA 1692 47.64 MSDPAPDPQPKGGNEAEMSEEDRKIRLASLKQKAISASNKYKLSMKKRGRRNSSRVMSISIEDDIDAEELQAVDAFRQALILEELLPARHDDHHMMLRFLKARKFDFDKTKQMWTDMLQWRKEFGSDTIMEEFEFKEVDEVLKYYPQGHHGVDKDGRPVYIERLGQVDSTKLLEVTTMDRYINYHVREFERTFVLKFPACTIAAKKHIDQSTTILDVQGVGLKNFNKSARELIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQPKLLEIIDASELPEFIGGTCTCADKGGCMRSDKGPWNDPEIAKASGSFKAEAAPVAAAAPAVESGMSPKQSKSTPIIQEVPSGRKYGGEYQQYGQFMPVVDKAVDPSWALSSEKYGLSKDPFAHENYKVPEGFSNQIVGGIMALVMGIVTMVRLTRTMPKKLTEAAIYSSTVYYDGSMANRPALPSPAAVPLSDYMTMMKRMAELEERINVLNMQPAVMPADKEEMLNIALGKVETLEQELDTTKKALEESLAREAELTDYIEKKKKKKMVNPFRW 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2009831 2016261 - CmoCh02G003900.1 Cmo02g00390 375987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00390 563 PRINTS Cellular retinaldehyde-binding protein signature 297 306 - -
Cmo02g00390 563 PRINTS Cellular retinaldehyde-binding protein signature 95 117 - -
Cmo02g00390 563 PRINTS Cellular retinaldehyde-binding protein signature 264 283 - -
Cmo02g00390 563 SUPERFAMILY CRAL/TRIO N-terminal domain 63 132 IPR036273 -
Cmo02g00390 563 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 15 558 - -
Cmo02g00390 563 Gene3D - 31 124 - -
Cmo02g00390 563 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 137 311 IPR001251 -
Cmo02g00390 563 Pfam CRAL/TRIO domain 143 305 IPR001251 -
Cmo02g00390 563 Gene3D - 125 336 IPR036865 -
Cmo02g00390 563 SMART sec14_4 137 308 IPR001251 -
Cmo02g00390 563 Pfam CRAL/TRIO, N-terminal domain 89 116 IPR011074 -
Cmo02g00390 563 SMART CRAL_TRIO_N_2 92 117 IPR011074 -
Cmo02g00390 563 Coils Coil 482 502 - -
Cmo02g00390 563 CDD SEC14 139 306 IPR001251 -
Cmo02g00390 563 SUPERFAMILY CRAL/TRIO domain 137 333 IPR036865 -
Cmo02g00390 563 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 15 558 - -
Cmo02g00390 563 Coils Coil 514 541 - -
Cmo02g00390 563 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00390 - - - csv:101214906 933.324
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00390 Cmo20g00843 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00390 Cmo-Chr2:2009831 Cmo20g00843 Cmo-Chr20:4240374 0 dispersed
Cmo02g00820 Cmo-Chr2:5004087 Cmo02g00390 Cmo-Chr2:2009831 3.41E-09 dispersed
Cmo02g00389 Cmo-Chr2:2003406 Cmo02g00390 Cmo-Chr2:2009831 5.88E-23 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00390 Cmo_Chr02 FPKM 18.662519 19.022867 9.180877 10.695598 13.590046 12.398376 17.17605 14.48942 13.668133 15.706255