Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00391 ATGACTACGTCATTAGTGAAGATTTTCATCCCCTCGGTTCTACCCTACTTCTGTGGAAGTCGGGTGTGCGGGGGAAGATCATTCAAGTTACCATCATTTAGGTTTGGTCGAGTTTTTAGTTCTAATATGGCTGGTGATCCTTTGACAAGCTCTGATGGCAATGCACAACCTGATCCACGGAGGACGTATCAGGTTGTTGTGGCGGCTACTGAAAATATGGGTATTGGTAAGGATGGGCAACTACCATGGACGTTGCCGTCTGATCTCAAGTTTTTTAGAAACATAACCACGACAACATCGGATCCAGGGAAAAGGAATGCAATTCTAATGGGTCGAAAAACATGGGAGGGTATTCCTCCTGAGCGTCGACCACTACCTGGTCGTCTCAATGTTGTTCTGACTCGCTCGGGGAGTTTTGACATTGCCACTGTTGAAAATGTCATAATATGTGGTAGTATAACGTCTGCTTTGGAGTTATTAGCAGCTTCTCCGTACTGTTTGTCAATAGAGAAAGTGTTCGTTATAGGTGGTGGCGAGATATTAAGGGAAGCTCTGAATGCCCCTGAATGTGATGCTATCCACATTACTGAAATCGAGGCAAATGTTGACTGTGATACCTTCATTCCAGCTATCGATAAGTCTATGTTTCAGCCATGGTACTCGTCGTTTCCTGTGGTGGAAAATAACTTTCGATATTCTTTCACTAGTTATGTTCGTGTGAGGAGCTCGATCGAACCACCTATTGATCAGAACAATGGCCCGATCGGTAATAACAAGCCTGATTTCTCTAACTTTGAGGCTAAGAAGTTCTCTTTCCTACCGAAGGAGATTTTTGAGAGGCACGAGGAGTACTTGTACTTAAAACTTGTTCAAGAAATTATCTCAAATGGTACCGCTAAGGAAGATAGAACAGGAACAGGTACTTTGTCAAGATTCGGGTGTCAGATGCGGTACAACTTGCGCAAGACGTTTCCGCTGCTTACAACTAAGAAAGTATTTTGGCGAGGGGTCGTTGAAGAACTTCTTTGGTTCGTAAGTGGTTCGACGAATGCAAAGGTTCTACAGGAGAAAGGCATTCATATTTGGGATAGCAACGCATCGAGAGATTACCTCAATAGTATTGGTTTGAAAGAACGGGAGGAGGGCGACTTGGGACCTGTATACGGGTTCCAATGGCGACACTTCGGTGCTAGGTATACTGACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAGAACAATCCCGACGACCGGAGGATCGTTCTTTCTGCTTCTTGGAATCCATCTGATCTCAAACTAATGGCACTTCCGCCTTGCCACATGTTCGCTCAGTTTTATGTAGCGAATGGGGAATTATCGTGTCAAATGTATCAGCGCTCTGCTGACATGGGCCTTGGTGTTCCGTTCAATATTGCATCATATGCTCTTCTGACGTGCATGATTGCTCATGTTTGTGGTCTTGCTCGAGGCGACTTCGTACACGTGATTGGAGATGCTCATGTTTACCGTACTCACGTGAGGCCATTGCAGGAGCAGCTTCAAAAACTCCCCAAACCGTTCCCGATTTTGAAGATTAACCCCGAGAAGAACGATATCGATTCTTTCGCGGCAGCTGATTTCGAATTAATCGGGGACTCAGTTCCTTTACCGTATATTATCCAAATTTTGAGGTACGAACATCGAAGGCGTTGGTTAATATGGAAAAAAGGCTGTACAGAAGGATATACGGAACTCATTACCATTTTCGAAGTTCTCAGTTTCTTCTTTAGAATTCGACCAGTTGCCCTAATCACTTGCAGGATTAACGAGATGCGAAAGCTTTGA 1854 44.17 MTTSLVKIFIPSVLPYFCGSRVCGGRSFKLPSFRFGRVFSSNMAGDPLTSSDGNAQPDPRRTYQVVVAATENMGIGKDGQLPWTLPSDLKFFRNITTTTSDPGKRNAILMGRKTWEGIPPERRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAIHITEIEANVDCDTFIPAIDKSMFQPWYSSFPVVENNFRYSFTSYVRVRSSIEPPIDQNNGPIGNNKPDFSNFEAKKFSFLPKEIFERHEEYLYLKLVQEIISNGTAKEDRTGTGTLSRFGCQMRYNLRKTFPLLTTKKVFWRGVVEELLWFVSGSTNAKVLQEKGIHIWDSNASRDYLNSIGLKEREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIVLSASWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGLARGDFVHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKNDIDSFAAADFELIGDSVPLPYIIQILRYEHRRRWLIWKKGCTEGYTELITIFEVLSFFFRIRPVALITCRINEMRKL 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2017541 2027343 + CmoCh02G003910.1 Cmo02g00391 375988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00391 617 CDD DHFR 66 238 IPR001796 GO:0004146|GO:0046654
Cmo02g00391 617 CDD TS_Pyrimidine_HMase 286 520 IPR023451 -
Cmo02g00391 617 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 74 96 IPR017925 GO:0004146
Cmo02g00391 617 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 269 554 IPR036926 -
Cmo02g00391 617 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 275 559 IPR036926 -
Cmo02g00391 617 Pfam Thymidylate synthase 286 554 IPR023451 -
Cmo02g00391 617 ProSitePatterns Thymidylate synthase active site. 429 457 IPR020940 GO:0004799|GO:0006231
Cmo02g00391 617 PANTHER THYMIDYLATE SYNTHASE 1 50 554 IPR045097 GO:0016741
Cmo02g00391 617 TIGRFAM thym_sym: thymidylate synthase 286 554 IPR000398 GO:0004799|GO:0006231
Cmo02g00391 617 SUPERFAMILY Dihydrofolate reductase-like 61 239 IPR024072 -
Cmo02g00391 617 Hamap Thymidylate synthase [thyA]. 283 568 IPR000398 GO:0004799|GO:0006231
Cmo02g00391 617 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 62 239 IPR001796 GO:0004146|GO:0046654
Cmo02g00391 617 Pfam Dihydrofolate reductase 64 239 IPR001796 GO:0004146|GO:0046654
Cmo02g00391 617 Gene3D Dihydrofolate Reductase, subunit A 46 241 IPR024072 -
Cmo02g00391 617 PIRSF DHFR-TS 48 563 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cmo02g00391 617 PRINTS Thymidylate synthase family signature 324 345 IPR000398 GO:0004799|GO:0006231
Cmo02g00391 617 PRINTS Thymidylate synthase family signature 418 437 IPR000398 GO:0004799|GO:0006231
Cmo02g00391 617 PRINTS Thymidylate synthase family signature 500 517 IPR000398 GO:0004799|GO:0006231
Cmo02g00391 617 PRINTS Thymidylate synthase family signature 444 459 IPR000398 GO:0004799|GO:0006231
Cmo02g00391 617 PRINTS Thymidylate synthase family signature 462 488 IPR000398 GO:0004799|GO:0006231
Cmo02g00391 617 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 50 554 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00391 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - csv:101208660 956.822
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00391 Cmo20g00846 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00846 Cmo-Chr20:4258644 Cmo02g00391 Cmo-Chr2:2017541 7.96E-102 transposed
Cmo02g00391 Cmo-Chr2:2017541 Cmo20g00845 Cmo-Chr20:4256776 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00391 Cmo_Chr02 FPKM 20.923504 21.559973 22.927271 21.457582 24.060764 27.448391 25.22187 39.725296 39.965206 36.710064