Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00396 ATGGCTCAGCCTGAATCGAACCAACCCCAAAGCACACCGGAGATCGATTCCGCCACCGCTTTACAACAATATTTCGATCGCATCCCCGTCAGTTCCATCTCCGGCATCAAATCCGCCCTCGTCTTGGAAGTGAAGACTGGGGACTGTGTTAAGGATGCAATAAGGGTTATGTTTAAGAAGAATGTGGATTGTGCTCTCATAGCCGATGTCACCAGCGAGGGATTTCCCGAGCGGTTCATTGGTTTTGTTCATCTCTCAAGCTTGCTTCTATGGTGTATTCAGGAGATTGGGAAGTTGGAGGATGAAATCAAATGCATTGAATCAGAGGAAACTCAAGAGAATGTTCGTGGGATTCTGAGTTTTCTTGAACAGAATCCACATATTGGCCAAACCAAGGTGGGTGAGTTAGGGAAAACATTTTTGTGGGATCCTTATTTCCCAGTAGGGATGAGGGATACACTTTTCCATGTTCTGCTATTGCTTTCAAAGCATCGGTTGCAGGCTGTTCCTGTAGTTCGGCTCTGCAATTCTCACGTCGTTGGTTTCATTACACAGTTCAGGTTTCATAATGAAGAGCATGTTCTTCATGTCTATGGCGATCAAAACATTATGGAAGCCTTTCAATTGCTATGGGAGAAACAAATGGGTGCAGTTGCTGTAACAGATAGAGAAAGTAAGAGCCTCATTGGTTGTTTGAGGAACAGCGACACATATCTTCTATTGGAGAAGGAAGATCTATTTCAGAATAGAAAGAGGCTAACAGTGAAGGAGTTCATGCATATGGAATCGAGTAAAGAACAAGCAGACTCTAACCCGACAGTCAAAGGGGGCCAGAGGGCACTTACCTTGTCGAGTGCTCGTCCTCTAGTTAAGTGCAGAGTTCCAAATATGCACACTCCAGTCACCATCAAGAGAGATGACACTCTGAAGCAAGTGATGAAAACTATGGCAGAAACAAATAGCTGTTTCAGCTTTCTTGTCAATAGTTCCCACCAAGCAACAGGGATACTCACCGTGGGAGACGTTATAACTCAGTTTGCTCCGCCCTGTATGGATTCAACCATTCAAGGAGGTGGTTTTTTTGAATCTGCTCTGGAACATACTGGCTGTCAGGTTAGAAATGGGACCTTAATTTGTAACAAAAGATCTTAG 1152 44.27 MAQPESNQPQSTPEIDSATALQQYFDRIPVSSISGIKSALVLEVKTGDCVKDAIRVMFKKNVDCALIADVTSEGFPERFIGFVHLSSLLLWCIQEIGKLEDEIKCIESEETQENVRGILSFLEQNPHIGQTKVGELGKTFLWDPYFPVGMRDTLFHVLLLLSKHRLQAVPVVRLCNSHVVGFITQFRFHNEEHVLHVYGDQNIMEAFQLLWEKQMGAVAVTDRESKSLIGCLRNSDTYLLLEKEDLFQNRKRLTVKEFMHMESSKEQADSNPTVKGGQRALTLSSARPLVKCRVPNMHTPVTIKRDDTLKQVMKTMAETNSCFSFLVNSSHQATGILTVGDVITQFAPPCMDSTIQGGGFFESALEHTGCQVRNGTLICNKRS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2039142 2043290 + CmoCh02G003960.1 Cmo02g00396 375993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00396 383 CDD CBS_pair_SF 192 343 - -
Cmo02g00396 383 SUPERFAMILY CBS-domain pair 193 350 IPR046342 -
Cmo02g00396 383 ProSiteProfiles CBS domain profile. 296 353 IPR000644 -
Cmo02g00396 383 SUPERFAMILY CBS-domain pair 21 188 IPR046342 -
Cmo02g00396 383 PANTHER OS01G0633400 PROTEIN 10 381 - -
Cmo02g00396 383 Gene3D - 188 347 IPR046342 -
Cmo02g00396 383 SMART cbs_1 40 93 IPR000644 -
Cmo02g00396 383 SMART cbs_1 299 347 IPR000644 -
Cmo02g00396 383 SMART cbs_1 144 193 IPR000644 -
Cmo02g00396 383 CDD CBS_pair_SF 143 236 - -
Cmo02g00396 383 Gene3D - 8 187 IPR046342 -
Cmo02g00396 383 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 10 381 - -
Cmo02g00396 383 Pfam CBS domain 297 343 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00396 - - - cmax:111499532 734.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00396 Cmo-Chr2:2039142 Cmo10g00062 Cmo-Chr10:285217 7.32E-16 dispersed
Cmo02g00396 Cmo-Chr2:2039142 Cmo11g00038 Cmo-Chr11:159719 1.31E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g360 . . . . . . . . . . Cma02g00389 . Car02g00252 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00382 . Chy11g00369 . . . . . . . . . . Cmo02g00396 . . . . . . Cpe05g01268 . . . . . . . . . . . . . . . Csa02g01274 . Cme11g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013891 0 0 0 0 0 1 1 1 1 1 1 1 1 1 2 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00396 Cmo_Chr02 FPKM 8.609058 10.132128 13.631402 14.529862 8.076475 8.14578 7.205173 23.096533 24.075108 25.097456