Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00399 ATGGCGCCTGCAGATATGAGCACTGCGAGGCTGATAAGGGTAGACCAATCTGGAAAGGGAGATTTTAGGAAGATTCAAGAAGCCATTGATTCTGTTCCATCCCGAAACAATGAACTCGTTTTCATTTGGATCAAACCCGGAACTTATAGGGAGAAAATTGTGGTGCCGGAGGATAAGCCGTTCATAACATTGAGCGGCAGCAAAGCCTCCGACACCATAATCACATGGAACCAAGGAAGAGATTTACTTCAATCTCCGGCGATCTCTATCTTCGCCGCGGACTTCGTCGGCCGTTTTCTGACCATCCAGAACACATACGGCACCACCGGCATTGCGGTGGCGCTGAGGGTCTCCGCCGACAGAGCCGCCTTCTACGGCTGCCGGATCATATCCTTTCAAGACACCCTCCTAGACGACGTCGGAAGACACTACTTCAAGAACTGTTACATCGAAGGCGCCACCGATTTCATATGCGGAAACGCAGCTTCTCTCTACGAGAAGTGTCATTTGCACTCAACGTCGGAGAGAGGCGGGGCGATGACAGCGCAACACCGTAACACGGTGGCGGAGAACACTGGGTTCGTGTTCTTGGGGTGCAAAATTACAGGAAGTGGATCGGCTTTACTTGGACGGCCATGGGGGGATTGCTCAAGAGTTGTGTTCGGCTACACTCATATGAGCAACGTTGTTGTGCCAGAGGGCTGGAATGACTGGGGAGATCACACCAAGCAAAGGACGGTGTTCTATGGGGAATACAAATGCTACGGACCAGGGGCGAACAGAGCAAAAAGAGTAGTGTGGTCACGCAGCCTCTCGACGGATGAGGCTGCAAAACTCTTCACAAAAGACATGATCGGCGGTCGAGGTTGGCTCCGACCTGCTCCGTCTCATTTCAAGAGAAGCTCCTCCACCATTGTCCAGATCGTACGAGCATCATCTTCGTTCCATTTGCGGTTCACCGGCGCAGCTCCGATCAGGTTTTTATTCGCTGAAAATCTTCGTCCCATGGCGCAAAAGCTCAAGGTTCTCATCATCGGAGGAACTGGTTACATCGGAAAGTTTATAGTAGAAGCCAGCGCCAAAGCAGGTCATCCAACTTATGCATTGGTTCGGGAATCCACGCTTGCTGACTCCGCCAAGTCTTCGATTATCGATAATTTCAGGAGCTTGGGAGTCAATTTCCTCTTCGGCGATATCTTCGACAATGAGAGTCTGGTTAAGGCAATAAAGCAAGTTGATGTGGTGATATCCACCGTTGGTCGGGCTCTGTTAGCCAATCAAGATAAGATCATATCTGCTATCAAACAAGCTGGTAATGTGAAGAGATTCTTACCCTCAGAATTTGGCAACGATGTGGATCGTGTCCACGCAGTGGAGCCGGCAAAATCAATGTTTGCTGCTAAGGCTGAAATTCGTAGGGCTATTGAAGCAGAGGGAATCCCCCATACGTTTGTTGTATGCAATTTCTTCGATGGTTACTTTCTTCGCAACTTTTGTCAGCCAGGAGCCACCGATCCACCAAGAGACAAAATCAAAATCATTGGGGATGGTAGTCCCAAAGTGATATACAACAAGGAAGAAGACATTGGCACGTACACCATCCGAGCCATCGAGGATCCAAGAACGCTCAATAAGATCTTGTACATTAGACCTCCTGCCAACATCTACTCGACTAACGAGCTAGTCTCGCTGTGGGAGAAAAAAATTGGCACGACTCTTGAACGGATCTACGTTCCTGAAGAGGAGCTATTGAAGAACATACAAGAGGCTCCATTTCCACTAAACACAGTATTGGCTATTAGTCATACTGCATTTGTGAAGGGCGATCATACCAACTTTGAGATTGAACCATCATTTGGAGTGGAAGCTTCAGAGCTATACTCAGATGTTAAATACACAACTGTGGAAGAATACCTCAACCAGTTTGTTTAG 1932 48.4 MAPADMSTARLIRVDQSGKGDFRKIQEAIDSVPSRNNELVFIWIKPGTYREKIVVPEDKPFITLSGSKASDTIITWNQGRDLLQSPAISIFAADFVGRFLTIQNTYGTTGIAVALRVSADRAAFYGCRIISFQDTLLDDVGRHYFKNCYIEGATDFICGNAASLYEKCHLHSTSERGGAMTAQHRNTVAENTGFVFLGCKITGSGSALLGRPWGDCSRVVFGYTHMSNVVVPEGWNDWGDHTKQRTVFYGEYKCYGPGANRAKRVVWSRSLSTDEAAKLFTKDMIGGRGWLRPAPSHFKRSSSTIVQIVRASSSFHLRFTGAAPIRFLFAENLRPMAQKLKVLIIGGTGYIGKFIVEASAKAGHPTYALVRESTLADSAKSSIIDNFRSLGVNFLFGDIFDNESLVKAIKQVDVVISTVGRALLANQDKIISAIKQAGNVKRFLPSEFGNDVDRVHAVEPAKSMFAAKAEIRRAIEAEGIPHTFVVCNFFDGYFLRNFCQPGATDPPRDKIKIIGDGSPKVIYNKEEDIGTYTIRAIEDPRTLNKILYIRPPANIYSTNELVSLWEKKIGTTLERIYVPEEELLKNIQEAPFPLNTVLAISHTAFVKGDHTNFEIEPSFGVEASELYSDVKYTTVEEYLNQFV 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2060707 2065303 - CmoCh02G003990.1 Cmo02g00399 375996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00399 643 Gene3D - 6 301 IPR012334 -
Cmo02g00399 643 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 341 610 IPR036291 -
Cmo02g00399 643 Pfam NmrA-like family 342 632 IPR008030 -
Cmo02g00399 643 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 336 643 - -
Cmo02g00399 643 CDD PCBER_SDR_a 341 638 IPR045312 GO:0016491
Cmo02g00399 643 SUPERFAMILY Pectin lyase-like 8 298 IPR011050 -
Cmo02g00399 643 PANTHER PINORESINOL REDUCTASE-RELATED 336 643 - -
Cmo02g00399 643 Gene3D - 489 639 - -
Cmo02g00399 643 Pfam Pectinesterase 14 282 IPR000070 GO:0030599|GO:0042545
Cmo02g00399 643 Gene3D - 341 629 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00399 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] K01051 csv:101215864 551.592
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00399 Cmo20g00855 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00399 Cmo-Chr2:2060707 Cmo12g00414 Cmo-Chr12:2551353 9.08E-159 dispersed
Cmo15g00263 Cmo-Chr15:1272040 Cmo02g00399 Cmo-Chr2:2060707 8.86E-76 dispersed
Cmo19g00219 Cmo-Chr19:1457772 Cmo02g00399 Cmo-Chr2:2060707 1.34E-64 dispersed
Cmo19g00691 Cmo-Chr19:7308079 Cmo02g00399 Cmo-Chr2:2060707 4.46E-66 dispersed
Cmo19g00551 Cmo-Chr19:6335817 Cmo02g00399 Cmo-Chr2:2060707 1.34E-142 transposed
Cmo12g00413 Cmo-Chr12:2544176 Cmo02g00399 Cmo-Chr2:2060707 2.12E-104 wgd
Cmo19g00690 Cmo-Chr19:7301064 Cmo02g00399 Cmo-Chr2:2060707 7.41E-30 wgd
Cmo02g00399 Cmo-Chr2:2060707 Cmo20g00855 Cmo-Chr20:4302016 3.04E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g367 . . . . . . . . . . Cma02g00392 Cma20g00844 Car02g00255 Car20g00731 . . . Bhi05g01245 Tan02g0784 Cmetu01g1772 . . . . . . . . . . . . . . . Lsi10g00378 . . . . . . . . . . . Sed01g0298 Cmo02g00399 Cmo20g00855 . . . . . . Bhi10g01996 Tan05g1294 Cmetu11g1946 . . . . . . . . . . . . Csa02g01267 . Cme11g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00399 Cmo_Chr02 FPKM 10.911458 8.979571 35.919624 33.354385 19.90416 11.701833 24.028662 33.109333 46.072712 49.267239