Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00400 ATGCTGTCGAAGTCGGAGATGACAATGTCGGAAAAACAGAGGACTCCAGTCAAATGGCGGCGAAGCCACGGTGACTGCCACAGCTTGTCGCCCGTCTCGAATCAAGCGAGCCGGGTCAATGATTTTCAGGATCTGCTTGCACCTGGAGGTTGGCCTGAGTTGACCAAGTACGAGTTCTCCTCCACCGAGACATGTTCGCCACCGCCGGAGGTGATCTCCAAACCCAGAAAAGCGAACTCCGTGGCGGTCGGAGAGATTCCGAAGAAGAGAAAGGCCAACAAGAACAAGGAACTGAAATCCAAACTGGGTAATGCTGAATCTGACAAAAGAATCAAACCAAATAATCAAGAAGAAGAACAACAACAATCAAAGATAACAGAGGAAACAGAGGAAACAGAGGAAACAGAGACGTCGAAACAGAGTTCAAGAGCTTCTGATTACGTTCATGTAAGAGCCCGTCCAGGCCAAGCTACAGATAGCCACAGTCTCGCAGAACGAGCGAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAACTTGGTACCTGGGTGTAACAAAATTGCAGGAAAAGCTGGAATGCTGGATGAAATTATAAATTATGTTCAATCTCTTCAGCAACAAGTGGAGGTGATGTTCTTATCCATGAAGCTGGCCACTGCGAATCCGAGACTCGATTTCATCAATGTCGATGACCCTTTTTGTAAACAGGTGTTTCCGGCGACGGAAATCTCCCCGGAAACGGCTACTTCTTCATCGTACTTTAATGAGCTTGGAATCAGCTCAAGTTCTGTAACAGTCCCACAAACTCCATTGATCAGCTCAGCTTCTGTTACTCAATTGGAGCTCTGTTCAACTTGGGGAGATGATTTACAAAGGGTTTGCAGTATGAGCTTAGAAGAAGGAGGGCCGCCATTGTTGTCGCTATCGAGCTTTCTGTGGCAGCAATATCCAGGCATTGAAGATGAAAAGGAAACATTTGTAGACGACAAAGTTGTCGGTCCATTTTAA 1014 46.35 MLSKSEMTMSEKQRTPVKWRRSHGDCHSLSPVSNQASRVNDFQDLLAPGGWPELTKYEFSSTETCSPPPEVISKPRKANSVAVGEIPKKRKANKNKELKSKLGNAESDKRIKPNNQEEEQQQSKITEETEETEETETSKQSSRASDYVHVRARPGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEVMFLSMKLATANPRLDFINVDDPFCKQVFPATEISPETATSSSYFNELGISSSSVTVPQTPLISSASVTQLELCSTWGDDLQRVCSMSLEEGGPPLLSLSSFLWQQYPGIEDEKETFVDDKVVGPF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2069636 2071039 - CmoCh02G004000.1 Cmo02g00400 375997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00400 337 MobiDBLite consensus disorder prediction 83 128 - -
Cmo02g00400 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983
Cmo02g00400 337 MobiDBLite consensus disorder prediction 58 164 - -
Cmo02g00400 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 214 IPR036638 GO:0046983
Cmo02g00400 337 MobiDBLite consensus disorder prediction 1 37 - -
Cmo02g00400 337 PANTHER TRANSCRIPTION FACTOR BHLH63 75 256 - -
Cmo02g00400 337 SMART finulus 162 212 IPR011598 GO:0046983
Cmo02g00400 337 Coils Coil 88 108 - -
Cmo02g00400 337 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Cmo02g00400 337 Coils Coil 115 135 - -
Cmo02g00400 337 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 256 IPR024097 GO:0006355
Cmo02g00400 337 CDD bHLH_AtBPE_like 146 233 - -
Cmo02g00400 337 MobiDBLite consensus disorder prediction 11 25 - -
Cmo02g00400 337 Gene3D - 155 226 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00400 - - - cpep:111795128 419.853
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00400 Cmo20g00857 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00400 Cmo-Chr2:2069636 Cmo08g00241 Cmo-Chr8:1463780 4.19E-44 dispersed
Cmo11g01117 Cmo-Chr11:6266486 Cmo02g00400 Cmo-Chr2:2069636 1.85E-57 wgd
Cmo19g00689 Cmo-Chr19:7294534 Cmo02g00400 Cmo-Chr2:2069636 6.63E-61 wgd
Cmo02g00400 Cmo-Chr2:2069636 Cmo20g00857 Cmo-Chr20:4313087 6.65E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g377 Blo02g00804 Blo15g00700 . Bda08g00933 Bpe07g00427 . Bma05g00457 Bma12g00509 . . . Cma20g00847 Car02g00257 . Sed05g2313 . . Bhi05g01240 Tan02g0787 Cmetu01g0279 . Hepe02g0492 . . . . . . . . . Cone12ag1155 Cone8ag1204 Cone3ag1165 . . . Chy11g00377 . . . . . . . . . . Cmo02g00400 Cmo20g00857 . . . . . Cpe05g01262 Bhi10g02007 Tan05g1302 Cmetu11g0539 . . . . . . . . . . . . Csa02g01259 . Cme11g00114
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012104 0 3 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9214 PF00010 HLH 2.60E-06 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00400 Cmo_Chr02 FPKM 666.768494 768.808289 1437.395386 1395.92395 1477.253052 1514.40979 1405.808472 2517.25708 2671.807373 2594.551758