Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00401 ATGGCGAACATTTTCCACGTCTACCACCGGGTTCTCCGGTGGCTAATGAAGGTCGCCGGAGTCCGGCAAGAACTGGTCCAGATAGAACCAGGAACCACGATGAATTTCTGGGTACCCACCAGAAACCCGAAAAAAAACCGGAATCCACCGGTGGTCCTTCTCCATGGATTCGCCGGCAACGGGATCATGACGTGGCAATTTCAGGTGATGAATTTGGCCAGAAACTACGCCGTCTATGTACCGGACTTTCTCTTCTTCGGCGAGTCGGTGACGGACCGGGCGGAGAGATCGCCGGAGTTTCAGGCGGAGGGCGTGGTGAAGGGGCTGAGGAAGCTGGGGGTTGAGAGGCCGTGCGTTTTGGTGGGGTTTAGCTATGGGGCAATGGTGGGGTTTAGGCTGGCTGAGATGTACCCGGATTTGGTGGCGGCGATGGTGGTCACGTCGGCGCCGACGGCGTTGACGGAGTCGCTCAGCCGTGTGGCGCTGCTGGAGATTGGGTATAAAAGTTGGTCGGATTACTTGATTCCGAACACGGTCAACGGTGTGAAATCCTTGTTTGAAATTGGTTCCTTTGACTTCCCGGCGCTTCCTAATTGGATTATGAAACATTATTTGGAGGCAATGGTTAAGTACAGAAAGGAACAAGCAGAACTTCTTCGAGCATTGGTGGTACCCGATGATTTTACCATCTCTCAATTCCCACAGAAGATGCATATCATATGGGGGAGAAATGACAATTTATTTAATATGCAAATTGCTTACAATATGAAAGAGCAATTTGGAGGAGAAACAAGATTGGATTGCATAGAAAAAGCAGGCCATATTGTGCCAATGGAGCGCCCATTCATCTACAACAAATACCTTAAAAAATTTCTTCGTTCCTTGCAAACCCATCAACAATAA 903 49.5 MANIFHVYHRVLRWLMKVAGVRQELVQIEPGTTMNFWVPTRNPKKNRNPPVVLLHGFAGNGIMTWQFQVMNLARNYAVYVPDFLFFGESVTDRAERSPEFQAEGVVKGLRKLGVERPCVLVGFSYGAMVGFRLAEMYPDLVAAMVVTSAPTALTESLSRVALLEIGYKSWSDYLIPNTVNGVKSLFEIGSFDFPALPNWIMKHYLEAMVKYRKEQAELLRALVVPDDFTISQFPQKMHIIWGRNDNLFNMQIAYNMKEQFGGETRLDCIEKAGHIVPMERPFIYNKYLKKFLRSLQTHQQ 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2074033 2075827 + CmoCh02G004010.1 Cmo02g00401 375998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00401 300 Pfam alpha/beta hydrolase fold 49 158 IPR000073 -
Cmo02g00401 300 PRINTS Epoxide hydrolase signature 75 90 IPR000639 GO:0003824
Cmo02g00401 300 PRINTS Epoxide hydrolase signature 120 133 IPR000639 GO:0003824
Cmo02g00401 300 PRINTS Epoxide hydrolase signature 134 147 IPR000639 GO:0003824
Cmo02g00401 300 PRINTS Epoxide hydrolase signature 269 291 IPR000639 GO:0003824
Cmo02g00401 300 Gene3D alpha/beta hydrolase 3 300 IPR029058 -
Cmo02g00401 300 PRINTS Alpha/beta hydrolase fold signature 75 90 IPR000073 -
Cmo02g00401 300 PRINTS Alpha/beta hydrolase fold signature 120 133 IPR000073 -
Cmo02g00401 300 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Cmo02g00401 300 PRINTS Alpha/beta hydrolase fold signature 237 251 IPR000073 -
Cmo02g00401 300 SUPERFAMILY alpha/beta-Hydrolases 19 294 IPR029058 -
Cmo02g00401 300 PANTHER EPOXIDE HYDROLASE 4-LIKE 2 292 - -
Cmo02g00401 300 PANTHER SI:DKEY-122A22.2 2 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00401 - - - csv:101216828 426.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00401 Cmo-Chr2:2074033 Cmo16g00678 Cmo-Chr16:3351269 3.01E-97 dispersed
Cmo02g00401 Cmo-Chr2:2074033 Cmo03g00853 Cmo-Chr3:6716588 9.41E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g601 . . Bda06g00935 . . . . Bma12g00515 . . . . Car02g00258 . . . . . . . . . . . . . . . . . . . . . Cone10ag0964 Lsi10g00369 . . . . . . . . . . . Sed05g3619 Cmo02g00401 . . . . . . Cpe05g01261 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . . Csa02g01258 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002258 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 3 2 2 2 5 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00401 Cmo_Chr02 FPKM 8.131907 8.520443 1.884753 2.066809 5.574213 5.586103 6.178353 2.391685 2.753002 2.639866