Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00408 ATGGATGCGAAGCTGATACAGCGACTGGAGTCGGCTGTGGCTCGGCTTGAGGCCTTGTCTACTGGATTCCGGCCCGGTGGTGCACCGGAGAGCGGCGAGGATGCGGTGTCCGACCCCTCGATTCTGGGTTTTGACGATCTGATGGGACAGTACTTTGCAAGGGTTTATAGCGCCGCCGAGAAAATTGGGGGTCAGGTTCTTAAGGTCACTGAGATTTTGAAAGAGGCCTTCTCTGTTCAAAGGGAGCTTCTTGTCAAGATCAAGCAAACTCAGAAACCTGACTTGGCAGGCTTAGCTGAATTTCTGAAGCCATTGAACGAAGTTATTATGAAAGCAAATGCACTCACAGAAGGAAGGAGATCTGATTTCTTCAACCATTTGAAAGCAGCAGCTGATAGTCTATCTGCTTTAGCTTGGATTGCATTTACTGGAAAAGACTGTGGTATGAGTATGCCGATCGCCCATGTCGAAGAAAGTTGGCAAATGGCTGAATTCTACAACAACAAAGTTCTGGTCGAGTACCGAAATAAAGATCCCGATCACGTCGAGTGGGCCAAAGCTATGAAAGAGCTCTATTTGCCAGGTTTAAGGGACTATGTCAAAAGTTTTTATCCCTTGGGACCAGTATGGAGTGTTACGGGGAAAAACGCTGCTGCTGCTGCTGCTACTGCTCCTCCTCCTCCTAAAACATCAGCACCACGCACCCCGGCCGCACCTCCGCCCCCTCCAGCCTCGCTTTTCAGCTCTGAACCTTCTCAAGCTTCATCTTCCAAGCCAAAACAAGGGATGGCTGCTGTTTTCCAAGAAATTAATTCCGGGAAGCCTGTGACTTCAGTATTTGAACATCGCTATGCATTTTCTCTGCCACTAGGTCTTAAGAAAGTCACAGACGACATGAAGACGAAGAACCGTGCAGATAGAGTTGGTGTTGTTGGTTCCAGTCAGAAAGGTGGCCGTACCGCCTCACCTTCGTTTTCCAAAGCAGGTCCTCCGAAGTTAGAACTTCAGATGGGTCGAAAGTGGGTCGTTGAGAACCAGGTTGGAAGAAAAAACTTGGTCATTGATGATTGTGATGCTAAACAATCTGTATATATCTTTGGATGCAAAGATTCAGTTTTGCAGATTCAAGGGAAGGTCAACAATATAACGGTCGACAAGTGCACGAAAATGGGTGTCGTATTCACGGATGTTGTGGCTGCATTTGAGATTGTTAACTCCAATGGGGTTGAAGTGCAATGCCAGGGCTCTGCTCCAACTATTTCTGTGGACAATACTGGAGGCTGTGTATTATATCTAAGCAAAGATTCTTTGGGGACATCCATTACGACTGCCAAGTCGAGTGAGATCAATGTTTTGGTACCCGGGTCGGACGGTGATTGGGTGGAGCATGCTTTACCGCAACAGTTCGTTCATTCGTTTAAGGACGGGCGCTTCGAAACCACTCCAGTCTCTCACTCAGGAGGTTTCATCTCCTAA 1476 47.7 MDAKLIQRLESAVARLEALSTGFRPGGAPESGEDAVSDPSILGFDDLMGQYFARVYSAAEKIGGQVLKVTEILKEAFSVQRELLVKIKQTQKPDLAGLAEFLKPLNEVIMKANALTEGRRSDFFNHLKAAADSLSALAWIAFTGKDCGMSMPIAHVEESWQMAEFYNNKVLVEYRNKDPDHVEWAKAMKELYLPGLRDYVKSFYPLGPVWSVTGKNAAAAAATAPPPPKTSAPRTPAAPPPPPASLFSSEPSQASSSKPKQGMAAVFQEINSGKPVTSVFEHRYAFSLPLGLKKVTDDMKTKNRADRVGVVGSSQKGGRTASPSFSKAGPPKLELQMGRKWVVENQVGRKNLVIDDCDAKQSVYIFGCKDSVLQIQGKVNNITVDKCTKMGVVFTDVVAAFEIVNSNGVEVQCQGSAPTISVDNTGGCVLYLSKDSLGTSITTAKSSEINVLVPGSDGDWVEHALPQQFVHSFKDGRFETTPVSHSGGFIS 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2102040 2107529 + CmoCh02G004080.1 Cmo02g00408 376005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00408 491 ProSitePatterns CAP protein signature 1. 5 17 IPR018106 -
Cmo02g00408 491 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 330 487 IPR036223 -
Cmo02g00408 491 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 1 487 - -
Cmo02g00408 491 MobiDBLite consensus disorder prediction 226 247 - -
Cmo02g00408 491 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 1 487 IPR001837 GO:0003779|GO:0007010
Cmo02g00408 491 SMART carp 368 405 IPR006599 -
Cmo02g00408 491 SMART carp 406 443 IPR006599 -
Cmo02g00408 491 MobiDBLite consensus disorder prediction 310 330 - -
Cmo02g00408 491 MobiDBLite consensus disorder prediction 248 262 - -
Cmo02g00408 491 Pfam Adenylate cyclase associated (CAP) C terminal 330 485 IPR013912 GO:0003779|GO:0007010
Cmo02g00408 491 ProSiteProfiles C-CAP/cofactor C-like domain profile. 330 465 IPR017901 -
Cmo02g00408 491 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 41 243 IPR036222 -
Cmo02g00408 491 Gene3D - 40 216 IPR036222 -
Cmo02g00408 491 Gene3D - 329 487 IPR016098 -
Cmo02g00408 491 MobiDBLite consensus disorder prediction 221 262 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00408 K17261 CAP1_2, SRV2; adenylyl cyclase-associated protein - csv:101212738 823.157
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00408 Cmo19g00676 CCT
Cmo02g00408 Cmo20g00863 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00676 Cmo-Chr19:7194325 Cmo02g00408 Cmo-Chr2:2102040 0 wgd
Cmo02g00408 Cmo-Chr2:2102040 Cmo20g00863 Cmo-Chr20:4354772 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g586 Blo02g00802 . . Bda08g00928 . . Bma05g00467 . Cmo19g00676 . Cma02g00403 . Car02g00263 Car20g00737 Sed04g3936 . Cpe15g00536 Bhi05g01226 Tan02g0805 Cmetu01g2256 . Hepe02g0512 . . Cla02g00526 Cam02g0544 Cec02g0545 Cco02g0551 Clacu02g0545 Cmu02g0540 Cre02g0871 . . Cone3ag1160 Cone10ag1168 Lsi10g00362 . Chy11g00386 Cme01g01427 . . . . . . . . Sed01g0307 Cmo02g00408 Cmo20g00863 . Cma19g00662 . Car19g00505 . Cpe05g01254 Bhi10g02018 Tan05g1316 Cmetu11g1598 . Hepe08g1021 . . . . . . . . . Lsi11g01099 Csa02g01251 Chy01g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002540 1 2 1 2 1 2 3 2 2 2 1 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00408 Cmo_Chr02 FPKM 14.551402 15.24111 2.730704 3.393183 1.733711 1.420484 2.428378 1.053254 1.214849 1.920541