Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00410 | ATGTCTGATTCATCGGATTCTCCCTCTCCTTCTTCCGAATCGGATTCGGATTCTGGTTCCTCTCCCCCGCCTCCGTCTGATTCATCTCCACCTGCGCCCGAGTCCTCTCCGCCACCGCCGCAGGATGTTTCTCCGCCTCCTCCGACTGGTTCATCTCCACCTCCTCCGAATGCATCGCCGCCACCGCCGAATGACTCAACGTCTTCATCTCCTCCATCTCCTCCATCTCCTCCTCCGCCTCCTCCACCGCCACCACCTCCTCCGCCTTCTCCTCCACCTCCTGGATCCTCCAGGCATACTTCTCCGCCGAAATCGATCTCCTCCTCGCCTCATTCCCGATCCTCGGACTCCTCATCCGGCGACTCTACGCCTGAGGTGGTTCCGATTATTGTAGGAGTGGCGGTGGCGGCAGGATTTTTGCTATTCGCCATGGCACTGATATTCTTCGCTTGCAGCCGAAAGAAAAAGAAGCGTGAGAGTAATACCGTATACTACGATGATCGGCCTAATCAGAAAGGTGGGGACCCCTATTACAACGGAAGGAATCAGAACTGGAACGGTACGGGCGAACATTTCGTGAACATACCGCCAGCCACCGGCGGAGGGCAAGGAGGAGGATGGCCACCGCCAGCCACCGGCGGTGGGCAGGGAGGAGCATGGCCACCGCCAGCCCCCGGCGGAGGGCAAGGAGGAGCATGGCCACCGCCAGCCCCCGGCGGAGGGCAAGGAGGAGTATGGCCACCGCCGCCGCCACCACCGGGATTATTAAGCAGCGACATGAGCTCAAGCTTCTCAGGGCCACATGGGCCACCGTTACCACCGCCACACCCGTCGGTGGCGCTGGGGTTCAATAAAAACACGTTCACATTCGACGAGCTGATGGCAGCGACAAGCGGATTCTCTCCGGCGAACTTGTTAGGGCAAGGCGGATTCGGATACGTTCATAAAGGAGTGCTGCCCAACGGCAAGGAAATTGCCGTAAAAAGCCTTAAAACAGGTAGCGGACAAGGAGATCGGGAATTCGCGGCGGAAGTAGAGATTATCAGCCGCGTCCACCACCGTCATTTGGTATCCCTCGTCGGTCATCCTCGCATCATCCATAGAGACATTAAGACGGCAAATATTCTTATAGACATGAGTTTTGAAGCAAAGGTGGCTGATTTTGGATTGGCTAAGCTCAACCAGGACAATTACACTCATGTATCCACTCGCGTTATGGGCACATTTGGTTATTTGGCTCCGGAATATGCATCAAGTGGGAAGCTAACAGAGAAATCAGACGTATTTTCATACGGAGTAATGCTTTTGGAGATCATAACTGGAAGACGACCCGTGGACGCATCGGGGGAGCTGATGGAGGACAGCTTAGTGGATTGGGCGAGGCCTCTATGCTTGAAAGCAATGACTGAAGGAGCCTACGAGGCGTTGGCAGATCCAAGATTGGAGAAGGACTACGACGCTCAGGAAATGGCATGCATGGTGGCTTGTGCTGCTGCATGCATTCGCCATTCTGCTAAACGCCGTCCCAAAATGAGCCAAGTTGTGCGGGCACTCGAAGGCGACGTATCGATGGAGGATTTGAACGACGGAGTAAAGCCAGGCCAAAGCTCATACTTCGGCTCCGGTACGTCGTCGGATTACGACGCAAGCTCTTACAGCGCCGACATGAAAAGGTTCAGAAAGGTAGCGTTGGAAAGCCGGGAATATACAAGCAGTGATTATGGTGGGACGAGCGAGTATGGGCTAAACCCATCAGCGACGAGCAGTGACAATAGTCAGAAGCCAAGCCAAGCGTCATCGCCCAATTTACAGCCCAACAAACCCTAA | 1827 | 55.12 | MSDSSDSPSPSSESDSDSGSSPPPPSDSSPPAPESSPPPPQDVSPPPPTGSSPPPPNASPPPPNDSTSSSPPSPPSPPPPPPPPPPPPPSPPPPGSSRHTSPPKSISSSPHSRSSDSSSGDSTPEVVPIIVGVAVAAGFLLFAMALIFFACSRKKKKRESNTVYYDDRPNQKGGDPYYNGRNQNWNGTGEHFVNIPPATGGGQGGGWPPPATGGGQGGAWPPPAPGGGQGGAWPPPAPGGGQGGVWPPPPPPPGLLSSDMSSSFSGPHGPPLPPPHPSVALGFNKNTFTFDELMAATSGFSPANLLGQGGFGYVHKGVLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLEIITGRRPVDASGELMEDSLVDWARPLCLKAMTEGAYEALADPRLEKDYDAQEMACMVACAAACIRHSAKRRPKMSQVVRALEGDVSMEDLNDGVKPGQSSYFGSGTSSDYDASSYSADMKRFRKVALESREYTSSDYGGTSEYGLNPSATSSDNSQKPSQASSPNLQPNKP | 608 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2119774 | 2122583 | - | CmoCh02G004100.1 | Cmo02g00410 | 376007 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00410 | 608 | MobiDBLite | consensus disorder prediction | 176 | 190 | - | - | |
Cmo02g00410 | 608 | Pfam | Protein kinase domain | 364 | 450 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00410 | 608 | PRINTS | Proline rich extensin signature | 68 | 93 | - | - | |
Cmo02g00410 | 608 | PRINTS | Proline rich extensin signature | 44 | 61 | - | - | |
Cmo02g00410 | 608 | PRINTS | Proline rich extensin signature | 3 | 24 | - | - | |
Cmo02g00410 | 608 | PRINTS | Proline rich extensin signature | 24 | 40 | - | - | |
Cmo02g00410 | 608 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cmo02g00410 | 608 | MobiDBLite | consensus disorder prediction | 525 | 550 | - | - | |
Cmo02g00410 | 608 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 | 362 | 576 | - | - | |
Cmo02g00410 | 608 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 | 7 | 362 | - | - | |
Cmo02g00410 | 608 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 362 | 576 | - | - | |
Cmo02g00410 | 608 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 7 | 362 | - | - | |
Cmo02g00410 | 608 | SUPERFAMILY | Protein kinase-like (PK-like) | 275 | 518 | IPR011009 | - | |
Cmo02g00410 | 608 | MobiDBLite | consensus disorder prediction | 1 | 123 | - | - | |
Cmo02g00410 | 608 | Gene3D | Transferase(Phosphotransferase) domain 1 | 365 | 532 | - | - | |
Cmo02g00410 | 608 | MobiDBLite | consensus disorder prediction | 534 | 550 | - | - | |
Cmo02g00410 | 608 | MobiDBLite | consensus disorder prediction | 157 | 278 | - | - | |
Cmo02g00410 | 608 | MobiDBLite | consensus disorder prediction | 568 | 608 | - | - | |
Cmo02g00410 | 608 | ProSiteProfiles | Protein kinase domain profile. | 300 | 524 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00410 | 608 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 365 | 377 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo02g00410 | 608 | ProSitePatterns | Protein kinases ATP-binding region signature. | 306 | 328 | IPR017441 | GO:0005524 | |
Cmo02g00410 | 608 | Gene3D | Phosphorylase Kinase; domain 1 | 278 | 364 | - | - | |
Cmo02g00410 | 608 | Pfam | Protein tyrosine and serine/threonine kinase | 305 | 361 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo02g00410 | 608 | MobiDBLite | consensus disorder prediction | 240 | 256 | - | - | |
Cmo02g00410 | 608 | MobiDBLite | consensus disorder prediction | 100 | 123 | - | - | |
Cmo02g00410 | 608 | MobiDBLite | consensus disorder prediction | 570 | 608 | - | - | |
Cmo02g00410 | 608 | MobiDBLite | consensus disorder prediction | 23 | 99 | - | - | |
Cmo02g00410 | 608 | SMART | serkin_6 | 300 | 481 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00410 | Cmo20g00866 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00410 | Cmo-Chr2:2119774 | Cmo12g01280 | Cmo-Chr12:11331888 | 7.32E-142 | dispersed | |
Cmo02g00410 | Cmo-Chr2:2119774 | Cmo20g00866 | Cmo-Chr20:4382714 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74091 | PF00069 | Pkinase | 6.40E-23 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00410 | - | - | mnt:21409551 | 442.58 |