Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00422 ATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGAGAATCTCTCCACGGCCTCGAGAACGAGGACTCTGAAATTCAGTGGATTCCTAAAAGTTCTGCGACTAAGGTTATTACGAAGGAATGTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTAATGGATATGTTATCATTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAATTTGTTTGCAGTACTTGTGGAGAAAGGGAGACATCATTTGTTTGCTACATCTGGTGTTACTATGATTGAGAATCAAAGTATTAGCTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTTCATGGCAATGATGCAACTAGAGTTGACTGTGGCCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAACGAGGGTCAAAGTCGGAGAATTAGATGCATGGCTCATAAATGTAACGCTATTTGCGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCGGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCGTACATTGAGGATAACAAGAGAGTCAAATGGTGTCCGAGTACCCCTCACTGTGGTAACGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGCGGTCTTCAATTTTGTTTCAGTTGCTTATCAGAGGCTCACTCACCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAATGTCGAGATGAATCCGAAACAGTTAACTGGATGACAGTACATACAAAACCCTGTCCAAAGTGCCACAAACCCGTCGAGAAGAATGGTGGCTGTAACCTTGTCAGTTGCATCTGTGGACAAGCATTTTGTTGGCTGTGTGGTGGAGCTACCGGTCGAGAACACACTTGGTCGAGTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAATCAGCACAAAAAGCCGAGAGAGCAAAACGGGATTTGTATCGCTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTGTAAGCTGGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATTTCGATATCTGAAGAGAGGGAATCCATGCTGAGAGATTTTAGTTGGGTAAACAATGGACTTCATAGGCTTTTCAGATCAAGGCGGGTTTTATCATATTCTTACCCATTTGCATTCTATATGTTCGGGGACGAGCTATTCAAAGACGAGATGACCGAGGAGGAAAGGGAAATAAAGCAACATCTATTTGAGGACCAACAACAACAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTCTTAGAGGAACCGTTTGATCAATACGCCAAAGATAAGGTAATGGAGATAAGGATGCAAGTCATCAATCTGTCCGTTATCACCGATACCCTTTGCAAGAAGATGTATGACTGCATTGAAAATGATCTTCTGGGTTCTCTTGAACTGGGTATACACAACATCGCTCCATACAAGTCGAAAGGAATCGAGAAAGCACTGGAACTTTCGGCTTGTTGGAACAGCAAAACGAATACTACTATTGATAAATATCTTCCATCAGACTGTAGTACAAGTGGAGGATTGTCGGAACGCGATCGTTTGTCTGGATTGAATTCCGACGAGAACGGATGCTCTTCTAGGAAGCGTGCCAGAGCAGACGTTGTTACTGGTAACTTTTTTGATCTAAACTTGCCTGCTGAGGTGGTTGACAGAAACTAA 1773 42.36 MEDCISSDEDYYDSDRESLHGLENEDSEIQWIPKSSATKVITKECLLAAQKEDMRRVMDMLSLREYHARTLLIHYRWDVENLFAVLVEKGRHHLFATSGVTMIENQSISSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWMTVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESAQKAERAKRDLYRYMHYHNRYKAHTDSCKLESKLKESIQEKISISEERESMLRDFSWVNNGLHRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYAKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKTNTTIDKYLPSDCSTSGGLSERDRLSGLNSDENGCSSRKRARADVVTGNFFDLNLPAEVVDRN 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2204409 2208250 - CmoCh02G004220.1 Cmo02g00422 376019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00422 590 Pfam Ariadne domain 329 590 IPR045840 -
Cmo02g00422 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Cmo02g00422 590 SUPERFAMILY RING/U-box 260 326 - -
Cmo02g00422 590 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cmo02g00422 590 SMART ibrneu5 190 252 IPR002867 -
Cmo02g00422 590 SMART ibrneu5 260 325 IPR002867 -
Cmo02g00422 590 MobiDBLite consensus disorder prediction 540 563 - -
Cmo02g00422 590 SUPERFAMILY RING/U-box 191 259 - -
Cmo02g00422 590 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cmo02g00422 590 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 516 - -
Cmo02g00422 590 SUPERFAMILY RING/U-box 114 202 - -
Cmo02g00422 590 MobiDBLite consensus disorder prediction 540 561 - -
Cmo02g00422 590 Gene3D - 248 496 - -
Cmo02g00422 590 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Cmo02g00422 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 516 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00422 Cmo-Chr2:2204409 Cmo12g01003 Cmo-Chr12:9353963 1.15E-57 dispersed
Cmo02g00422 Cmo-Chr2:2204409 Cmo20g00877 Cmo-Chr20:4428968 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00422 K11968 - csv:101205066 1140.18