Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00422 | ATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGAGAATCTCTCCACGGCCTCGAGAACGAGGACTCTGAAATTCAGTGGATTCCTAAAAGTTCTGCGACTAAGGTTATTACGAAGGAATGTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTAATGGATATGTTATCATTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAATTTGTTTGCAGTACTTGTGGAGAAAGGGAGACATCATTTGTTTGCTACATCTGGTGTTACTATGATTGAGAATCAAAGTATTAGCTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTTCATGGCAATGATGCAACTAGAGTTGACTGTGGCCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAACGAGGGTCAAAGTCGGAGAATTAGATGCATGGCTCATAAATGTAACGCTATTTGCGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCGGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCGTACATTGAGGATAACAAGAGAGTCAAATGGTGTCCGAGTACCCCTCACTGTGGTAACGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGCGGTCTTCAATTTTGTTTCAGTTGCTTATCAGAGGCTCACTCACCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAATGTCGAGATGAATCCGAAACAGTTAACTGGATGACAGTACATACAAAACCCTGTCCAAAGTGCCACAAACCCGTCGAGAAGAATGGTGGCTGTAACCTTGTCAGTTGCATCTGTGGACAAGCATTTTGTTGGCTGTGTGGTGGAGCTACCGGTCGAGAACACACTTGGTCGAGTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAATCAGCACAAAAAGCCGAGAGAGCAAAACGGGATTTGTATCGCTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTGTAAGCTGGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATTTCGATATCTGAAGAGAGGGAATCCATGCTGAGAGATTTTAGTTGGGTAAACAATGGACTTCATAGGCTTTTCAGATCAAGGCGGGTTTTATCATATTCTTACCCATTTGCATTCTATATGTTCGGGGACGAGCTATTCAAAGACGAGATGACCGAGGAGGAAAGGGAAATAAAGCAACATCTATTTGAGGACCAACAACAACAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTCTTAGAGGAACCGTTTGATCAATACGCCAAAGATAAGGTAATGGAGATAAGGATGCAAGTCATCAATCTGTCCGTTATCACCGATACCCTTTGCAAGAAGATGTATGACTGCATTGAAAATGATCTTCTGGGTTCTCTTGAACTGGGTATACACAACATCGCTCCATACAAGTCGAAAGGAATCGAGAAAGCACTGGAACTTTCGGCTTGTTGGAACAGCAAAACGAATACTACTATTGATAAATATCTTCCATCAGACTGTAGTACAAGTGGAGGATTGTCGGAACGCGATCGTTTGTCTGGATTGAATTCCGACGAGAACGGATGCTCTTCTAGGAAGCGTGCCAGAGCAGACGTTGTTACTGGTAACTTTTTTGATCTAAACTTGCCTGCTGAGGTGGTTGACAGAAACTAA | 1773 | 42.36 | MEDCISSDEDYYDSDRESLHGLENEDSEIQWIPKSSATKVITKECLLAAQKEDMRRVMDMLSLREYHARTLLIHYRWDVENLFAVLVEKGRHHLFATSGVTMIENQSISSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWMTVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESAQKAERAKRDLYRYMHYHNRYKAHTDSCKLESKLKESIQEKISISEERESMLRDFSWVNNGLHRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYAKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKTNTTIDKYLPSDCSTSGGLSERDRLSGLNSDENGCSSRKRARADVVTGNFFDLNLPAEVVDRN | 590 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2204409 | 2208250 | - | CmoCh02G004220.1 | Cmo02g00422 | 376019 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00422 | 590 | Pfam | Ariadne domain | 329 | 590 | IPR045840 | - | |
Cmo02g00422 | 590 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 204 | IPR013083 | - | |
Cmo02g00422 | 590 | SUPERFAMILY | RING/U-box | 260 | 326 | - | - | |
Cmo02g00422 | 590 | ProSiteProfiles | Zinc finger RING-type profile. | 119 | 167 | IPR001841 | - | |
Cmo02g00422 | 590 | SMART | ibrneu5 | 190 | 252 | IPR002867 | - | |
Cmo02g00422 | 590 | SMART | ibrneu5 | 260 | 325 | IPR002867 | - | |
Cmo02g00422 | 590 | MobiDBLite | consensus disorder prediction | 540 | 563 | - | - | |
Cmo02g00422 | 590 | SUPERFAMILY | RING/U-box | 191 | 259 | - | - | |
Cmo02g00422 | 590 | ProSiteProfiles | TRIAD supradomain profile. | 115 | 329 | IPR044066 | - | |
Cmo02g00422 | 590 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 6 | 516 | - | - | |
Cmo02g00422 | 590 | SUPERFAMILY | RING/U-box | 114 | 202 | - | - | |
Cmo02g00422 | 590 | MobiDBLite | consensus disorder prediction | 540 | 561 | - | - | |
Cmo02g00422 | 590 | Gene3D | - | 248 | 496 | - | - | |
Cmo02g00422 | 590 | Pfam | IBR domain, a half RING-finger domain | 191 | 252 | IPR002867 | - | |
Cmo02g00422 | 590 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 6 | 516 | IPR031127 | GO:0004842|GO:0016567 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00422 | Cmo-Chr2:2204409 | Cmo12g01003 | Cmo-Chr12:9353963 | 1.15E-57 | dispersed | |
Cmo02g00422 | Cmo-Chr2:2204409 | Cmo20g00877 | Cmo-Chr20:4428968 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00422 | K11968 | - | csv:101205066 | 1140.18 |