Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00428 ATGGATGGGCTTCTGAAGAAGTTTTTTCATGAGAAGCCTTCTTCTTCGGTTGGTAATGAGGATTTTAACCCTGAATATTCTTTTGCAATTGAGTATACAGGTCCTGGAATCAATTACGACATTCCCCGTGCAGTTCCTATCAATATCGATTATATTCCAACTGCTTCTGTTGTTGTTTCATCGTCTCAGTTCAGGGATGATGTATCAACGCTTCCAGTTATACAACCCATCGTTGGTAGATTTAGTAGGAGCTCAAGTTTGAAAGCCAATTTAGTGATTTCTTCAACCTCTGAAATCCAGGAAGATGGGCCTGTTTGCCTTGATGCCAATAAGAAAGATAATGGGAAAGATAAATGTGATATCATTGAAAGTTCTGGTGAACTTGAGAATTTCAATAAGCTAAAGGGAAGATTAGAAGGCGGGTTAGAATCACTGGAAATTAAGAATGAAGAGGATTTTCAAGGTTACACGAATTCGAGTGATTCAGAATCGGCAGAATCAGGTTTGAGCTCGTCTTCTGGGATTTTTGCTGTAAGAGGGGGAGAGGAAGTTGAAAATGAAATCCAGCCTTGGCATGGTAGGAAGCCATCAGCTGTTACTTTTCTGGATCCCCATTCGAGCAGCACGATTTCTGACGAGGCAGAATCGAGTCAATCTGATGCTGAAAGTATCCATGACATGCCAAGAGCTGAAAGGAAGGGGAAGAAAGGATCGTGCTACTACTGCCTTAAAGGAAACCGTTTCACTGAAAAGGAAGAGTGTATTGTCTGCGGAGCCAAATATTGTATTGCCTGTGTAATTAGGGCAATGGGATCAATGCCAGAAGGAAGAAAGTGTATCACTTGTATTGGGTTCAGGATTGATGAATCAAGAAGAAACAACCTGGGTAAGTGCACTAAAGTGCTCAAGAGGCTGTTTACTGACTTGGAAGTTAAGAACACTCTGACTCGGGAAAAAGAGTGTGAAATAAATCAGATACCTGCAAGACTTGTTTATATCAATGACCATCCTTTAAGTCGACAGGAACTGCTTATGCTGCGAAGTTGCCAAAAGCCACCAAAGAATCTAAAACCAGGACGATATTGGTATGACAAAGAATCGGGCTTCTGGGGAAAGGAAGGACGTGGACCGTGTCAGATAGTTAGCACCCATCTAGAGGTAGGAGGCCGCATTAAGAGGGATGCTAGCAATGGCAATACAAATGTTTGCATCAACAATCGAGAGATCACGAAAAAAGAGCTGCGGATATTGAAGGTGGCTTTATTTAATTACAAGAACGTGCATATAACACAAATGAGATCATGTTGCTTGCAGCTGGCTGGAGTACCTTGTGAAGGAAGACCTTCTTATTGGGTTAGCGCAGATGGATCATATCAGGAAGAGGGAATGAACAATGGAGGGAAAATATGGGACAAGCCTACAACGAAGCTTGCATGTGCCGTTTTTAATTTACCTATTCCTTCTAGTTCTGTTCATTCTGGAGAGGAAAAGGTGGATAAAGCTAGTTCTTCTCCTGAGCCGAAAATGCTTCATAAACTTCTACTTGTTGGCCATGACCAATCTGGCACGAGTACCATATTCAAGCAGCGGGCGAAAACTATATACCAGTATATGATTTGCTTCTCGTGTGTAATTTATATGTTGTGTCAACTACCTAGTCGAATGTGTGAAGTTAAAATGTTTTTATTCAAGCTTGTGTATTTTGAACTATCCGTTAAGGCCAAGCAAATATATAAAGTTCCTTTCTCTGATGACGAGCGTCAAGCCATTAAGTTCCTGATTCAAAGAAAATTGTATTGGTATATTAGTATACTACTGGAAGGTCGGGAACGTTTTGAAGAAGAGGTTTTGATGGATGAGAAGAATAAACAACCTGTGAATGATCCGTCTACCTCATCAGCTTCAGGGAATGACGTTCAGTTTGAGCGTAAAACCATCTATTCCTTTGGCCCTAAGCTGAAAGTGTTCGCCGACTGGCTTCTTCAAGTCGTAGTGTCAGGTTACTTTGAGACAACATTCCCAGCAGCTACCCGTGTGTACGCCCAATCAGTGGAAGAGTTGTTGAAGGACGAAGCGTTTCAAGCCACATACAGTAGAAGGAACGAACTAGAAATGCTCCCAAGAGTTTCAACTTATTTCCTTGATCGGGCTGTTGACATTTCAAGTGAAGACTATGACCCTTCTGACAATGATATCTTGTATGCCGAGGGAATCTCCTCATGTAAGAGCCTCAGTGACATGGAGTTCTCGTTCCCCGAGTCACGACAAGACTCCCTTCTCGATCCACCTTATCAGCATGACTCGTCAATAAGGTTGCTATTTGAAGTTCTTTATGGATTTTTGTTAGCCATTTATATGAAGTCATCTTCTAAAGAACTTCATGCCTTGTACCAGTTGATTCGAGTCCATCCCAGTACCCTGGGAGAGAACTGCAAACTGTTGGACATGTTTGAAGACATGAGCATTATCCTGTTTTGTGTTGCTCTGGTCGATTACGACGAATTCGACGAAGATGACAATGGAGTTTTAGTCAATCGGATGATCGCAAGCAAACAACTCTTCGAAAGGATCGTGACCGATCGAGCATTGAGTGGGAAGAACTTCCTTCTCATACTCAACAAGTTCGATCTCTTCGAAGAAAAAATCATCCAAGTTCCTCTTTCGCAATGCGAGTGGTTCGACGACTTCAATCCAATGATCACGCCAAATTCAACCGGAAGAAGCAGCAGCAGCAGCACCACAAACCCGTCGTTGGCTCAACGAGCGTTTCAGTACGTAGCGGTGAAATTCAAGAGATTGTTCTATTCTCTAACAGACAAAAAGCTGTTTGTTTCACAAACTACAGGGATGGAACCTGAAAATGTGAATGCAGCTCTCAGATATGCAAGGGAGATAATCAAATGGGAAGTAGACAAGCCTAACATCAGCATTACTGAAATTTCAACGGCCAGTGCTGATGCAAGCAGCTTTTTATAG 2976 42.14 MDGLLKKFFHEKPSSSVGNEDFNPEYSFAIEYTGPGINYDIPRAVPINIDYIPTASVVVSSSQFRDDVSTLPVIQPIVGRFSRSSSLKANLVISSTSEIQEDGPVCLDANKKDNGKDKCDIIESSGELENFNKLKGRLEGGLESLEIKNEEDFQGYTNSSDSESAESGLSSSSGIFAVRGGEEVENEIQPWHGRKPSAVTFLDPHSSSTISDEAESSQSDAESIHDMPRAERKGKKGSCYYCLKGNRFTEKEECIVCGAKYCIACVIRAMGSMPEGRKCITCIGFRIDESRRNNLGKCTKVLKRLFTDLEVKNTLTREKECEINQIPARLVYINDHPLSRQELLMLRSCQKPPKNLKPGRYWYDKESGFWGKEGRGPCQIVSTHLEVGGRIKRDASNGNTNVCINNREITKKELRILKVALFNYKNVHITQMRSCCLQLAGVPCEGRPSYWVSADGSYQEEGMNNGGKIWDKPTTKLACAVFNLPIPSSSVHSGEEKVDKASSSPEPKMLHKLLLVGHDQSGTSTIFKQRAKTIYQYMICFSCVIYMLCQLPSRMCEVKMFLFKLVYFELSVKAKQIYKVPFSDDERQAIKFLIQRKLYWYISILLEGRERFEEEVLMDEKNKQPVNDPSTSSASGNDVQFERKTIYSFGPKLKVFADWLLQVVVSGYFETTFPAATRVYAQSVEELLKDEAFQATYSRRNELEMLPRVSTYFLDRAVDISSEDYDPSDNDILYAEGISSCKSLSDMEFSFPESRQDSLLDPPYQHDSSIRLLFEVLYGFLLAIYMKSSSKELHALYQLIRVHPSTLGENCKLLDMFEDMSIILFCVALVDYDEFDEDDNGVLVNRMIASKQLFERIVTDRALSGKNFLLILNKFDLFEEKIIQVPLSQCEWFDDFNPMITPNSTGRSSSSSTTNPSLAQRAFQYVAVKFKRLFYSLTDKKLFVSQTTGMEPENVNAALRYAREIIKWEVDKPNISITEISTASADASSFL 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2238080 2243251 + CmoCh02G004280.1 Cmo02g00428 376025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00428 991 Pfam G-protein alpha subunit 574 966 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo02g00428 991 MobiDBLite consensus disorder prediction 153 172 - -
Cmo02g00428 991 MobiDBLite consensus disorder prediction 201 217 - -
Cmo02g00428 991 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 573 771 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo02g00428 991 Gene3D - 583 736 IPR011025 GO:0007165
Cmo02g00428 991 PRINTS Alpha G protein (transducin) signature 868 877 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo02g00428 991 PRINTS Alpha G protein (transducin) signature 820 848 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo02g00428 991 PRINTS Alpha G protein (transducin) signature 512 527 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo02g00428 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 968 IPR027417 -
Cmo02g00428 991 SUPERFAMILY Transducin (alpha subunit), insertion domain 582 735 IPR011025 GO:0007165
Cmo02g00428 991 Gene3D - 783 972 IPR027417 -
Cmo02g00428 991 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 426 536 - -
Cmo02g00428 991 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 15 424 - -
Cmo02g00428 991 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 792 989 - -
Cmo02g00428 991 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 573 771 - -
Cmo02g00428 991 MobiDBLite consensus disorder prediction 188 229 - -
Cmo02g00428 991 SMART galpha_1 569 975 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo02g00428 991 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 426 536 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo02g00428 991 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 792 989 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo02g00428 991 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 15 424 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo02g00428 991 ProSiteProfiles G-alpha domain profile. 509 978 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00428 - - - csv:101202880 1379.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00428 Cmo20g00886 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00762 Cmo-Chr1:3933589 Cmo02g00428 Cmo-Chr2:2238080 1.66E-06 dispersed
Cmo02g00428 Cmo-Chr2:2238080 Cmo03g01016 Cmo-Chr3:7616052 2.70E-09 dispersed
Cmo02g00428 Cmo-Chr2:2238080 Cmo20g00886 Cmo-Chr20:4475151 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00428 Cmo_Chr02 FPKM 53.817783 52.017052 523.780396 533.004028 65.149361 80.445763 61.215744 320.842499 343.589691 310.771332