Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00432 ATGACTGATTTTTCAGCTTTCCGAACGGGCTATCTCAAAAGGAAAATGCCGCGCCCTTATTTCCACAAGCTTGTTCTCTCTTCCACTATCCAAGCTAGGAAATTGAGAATCCCGGAAAGTTTCCTCCGGATGATCAGGGATGATCTTTCTGCAGTTGCAACACTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGGTTGAGGAAAGCTGATAATAAGTTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCGATAAGGGTCGGGTTTTTGTTAGTATTCAGATATGAGGGAAACTCATCATTCTGTATTTTTATCTTTAATCTTAATACATCTGAGATAAACTACCAATCTGCTGCTCTCGGTGGTAATCAAAGGAACAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGCCTTTGAACTCGGGTTTTTTACGAAACAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAATCCAAATATTTACCTACTCGAGATATCGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAGTCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCACACAGAATTAAAAAAAGTGGAGGCAAGAAGCGGAAACTTGATTCTAGCGAGCATCGTCTGTCTGCTCATAGTGAAGATTTCGGTGACAATCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGTTGTCAACGGTGCAAAAGCGTTCGAGCCCGCCAATCCCTTCTGTAGGGTCGTCTTGCGACCATCTTATCTATACAGGGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCGGATGGGAGACAGTGGCCGGTCCGGTGTCTTTATAAAGTTGGTCGGGCCAAGTTAAGTCAGGGATGGTATGAATTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTTGAGCTTCTGAGGGTGAGAGAAATCGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGACGGTAGACGAATGGTAAACCCGAATCCTCCCAGCATGATGAATCCACACTCGCTACAAAGTGCTAGCCAAATTAAGCTGATCAGAAACTAA 1233 42.66 MTDFSAFRTGYLKRKMPRPYFHKLVLSSTIQARKLRIPESFLRMIRDDLSAVATLTVPDGHVWRVGLRKADNKFWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCIFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEEMEDYDIPEAIPSNQPLNSGFLRNKLFGDEWNLHQSKSASTLQSKYLPTRDIGVQFSAVEVKKSADEVRFQNLGDDAHRIKKSGGKKRKLDSSEHRLSAHSEDFGDNRFRFYESASARKRTVTAEERERVVNGAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRVREIVLKVTMFRVIEDGRRMVNPNPPSMMNPHSLQSASQIKLIRN 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2256945 2260457 - CmoCh02G004320.1 Cmo02g00432 376029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00432 410 CDD B3_DNA 282 377 IPR003340 GO:0003677
Cmo02g00432 410 SMART B3_2 21 113 IPR003340 GO:0003677
Cmo02g00432 410 SMART B3_2 284 379 IPR003340 GO:0003677
Cmo02g00432 410 PANTHER B3 DOMAIN-CONTAINING 226 391 - -
Cmo02g00432 410 PANTHER B3 DOMAIN-CONTAINING 16 167 - -
Cmo02g00432 410 Pfam B3 DNA binding domain 287 377 IPR003340 GO:0003677
Cmo02g00432 410 Pfam B3 DNA binding domain 22 109 IPR003340 GO:0003677
Cmo02g00432 410 SUPERFAMILY DNA-binding pseudobarrel domain 279 380 IPR015300 -
Cmo02g00432 410 CDD B3_DNA 19 111 IPR003340 GO:0003677
Cmo02g00432 410 ProSiteProfiles B3 DNA-binding domain profile. 284 379 IPR003340 GO:0003677
Cmo02g00432 410 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 226 391 - -
Cmo02g00432 410 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 16 167 - -
Cmo02g00432 410 Gene3D - 261 381 IPR015300 -
Cmo02g00432 410 Gene3D - 13 114 IPR015300 -
Cmo02g00432 410 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Cmo02g00432 410 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00432 Cmo20g00891 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00432 Cmo-Chr2:2256945 Cmo20g00891 Cmo-Chr20:4516883 0 dispersed
Cmo20g01172 Cmo-Chr20:11517250 Cmo02g00432 Cmo-Chr2:2256945 6.87E-09 dispersed
Cmo02g00431 Cmo-Chr2:2250298 Cmo02g00432 Cmo-Chr2:2256945 1.80E-57 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9216 PF02362 B3 3.40E-18 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00432 - - csv:101213446 741.88