Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00432 | ATGACTGATTTTTCAGCTTTCCGAACGGGCTATCTCAAAAGGAAAATGCCGCGCCCTTATTTCCACAAGCTTGTTCTCTCTTCCACTATCCAAGCTAGGAAATTGAGAATCCCGGAAAGTTTCCTCCGGATGATCAGGGATGATCTTTCTGCAGTTGCAACACTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGGTTGAGGAAAGCTGATAATAAGTTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCGATAAGGGTCGGGTTTTTGTTAGTATTCAGATATGAGGGAAACTCATCATTCTGTATTTTTATCTTTAATCTTAATACATCTGAGATAAACTACCAATCTGCTGCTCTCGGTGGTAATCAAAGGAACAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGCCTTTGAACTCGGGTTTTTTACGAAACAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAATCCAAATATTTACCTACTCGAGATATCGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAGTCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCACACAGAATTAAAAAAAGTGGAGGCAAGAAGCGGAAACTTGATTCTAGCGAGCATCGTCTGTCTGCTCATAGTGAAGATTTCGGTGACAATCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGTTGTCAACGGTGCAAAAGCGTTCGAGCCCGCCAATCCCTTCTGTAGGGTCGTCTTGCGACCATCTTATCTATACAGGGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCGGATGGGAGACAGTGGCCGGTCCGGTGTCTTTATAAAGTTGGTCGGGCCAAGTTAAGTCAGGGATGGTATGAATTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTTGAGCTTCTGAGGGTGAGAGAAATCGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGACGGTAGACGAATGGTAAACCCGAATCCTCCCAGCATGATGAATCCACACTCGCTACAAAGTGCTAGCCAAATTAAGCTGATCAGAAACTAA | 1233 | 42.66 | MTDFSAFRTGYLKRKMPRPYFHKLVLSSTIQARKLRIPESFLRMIRDDLSAVATLTVPDGHVWRVGLRKADNKFWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCIFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEEMEDYDIPEAIPSNQPLNSGFLRNKLFGDEWNLHQSKSASTLQSKYLPTRDIGVQFSAVEVKKSADEVRFQNLGDDAHRIKKSGGKKRKLDSSEHRLSAHSEDFGDNRFRFYESASARKRTVTAEERERVVNGAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRVREIVLKVTMFRVIEDGRRMVNPNPPSMMNPHSLQSASQIKLIRN | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2256945 | 2260457 | - | CmoCh02G004320.1 | Cmo02g00432 | 376029 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00432 | 410 | CDD | B3_DNA | 282 | 377 | IPR003340 | GO:0003677 | |
Cmo02g00432 | 410 | SMART | B3_2 | 21 | 113 | IPR003340 | GO:0003677 | |
Cmo02g00432 | 410 | SMART | B3_2 | 284 | 379 | IPR003340 | GO:0003677 | |
Cmo02g00432 | 410 | PANTHER | B3 DOMAIN-CONTAINING | 226 | 391 | - | - | |
Cmo02g00432 | 410 | PANTHER | B3 DOMAIN-CONTAINING | 16 | 167 | - | - | |
Cmo02g00432 | 410 | Pfam | B3 DNA binding domain | 287 | 377 | IPR003340 | GO:0003677 | |
Cmo02g00432 | 410 | Pfam | B3 DNA binding domain | 22 | 109 | IPR003340 | GO:0003677 | |
Cmo02g00432 | 410 | SUPERFAMILY | DNA-binding pseudobarrel domain | 279 | 380 | IPR015300 | - | |
Cmo02g00432 | 410 | CDD | B3_DNA | 19 | 111 | IPR003340 | GO:0003677 | |
Cmo02g00432 | 410 | ProSiteProfiles | B3 DNA-binding domain profile. | 284 | 379 | IPR003340 | GO:0003677 | |
Cmo02g00432 | 410 | PANTHER | B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN | 226 | 391 | - | - | |
Cmo02g00432 | 410 | PANTHER | B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN | 16 | 167 | - | - | |
Cmo02g00432 | 410 | Gene3D | - | 261 | 381 | IPR015300 | - | |
Cmo02g00432 | 410 | Gene3D | - | 13 | 114 | IPR015300 | - | |
Cmo02g00432 | 410 | ProSiteProfiles | B3 DNA-binding domain profile. | 20 | 113 | IPR003340 | GO:0003677 | |
Cmo02g00432 | 410 | SUPERFAMILY | DNA-binding pseudobarrel domain | 17 | 113 | IPR015300 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00432 | Cmo20g00891 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00432 | Cmo-Chr2:2256945 | Cmo20g00891 | Cmo-Chr20:4516883 | 0 | dispersed | |
Cmo20g01172 | Cmo-Chr20:11517250 | Cmo02g00432 | Cmo-Chr2:2256945 | 6.87E-09 | dispersed | |
Cmo02g00431 | Cmo-Chr2:2250298 | Cmo02g00432 | Cmo-Chr2:2256945 | 1.80E-57 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9216 | PF02362 | B3 | 3.40E-18 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00432 | - | - | csv:101213446 | 741.88 |