Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00443 ATGGCGGAAGCGAATTCGGAAGAGAAGGTGAATGAGAATCCTGAAATGGATGTCAAAGAAGCTGTGAATGGCGATGGTGTTGGTAGTAGTAATAGCAATGGTAATCTTTCCTTCAAATTTAATGCTCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCCTATTTTCATTTTCTTGGTGGGGCTCCTGCTACTTCAGACTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCTCTCCCAAATTTCTCTAAGAACGCCCGTTCGGAGGATATTCAGCAAAAAATCGTCAAACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAACATTAGCAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTAAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGATCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAAACGTAAGCATCCGTTTACGGACAAGGACAAAGAGGAATTGCTGTCTCGTACAGTCGTTGTGGAGAATTTGCCCGACAATCACTCGCACCACAACCTCGAGAAAATATTTAGCGTCATTGGGAGTGTGAAGACGATCCGAATCTGTCATCCCCCGGAATCAAATCCGTGCTGCTCTAAAGGTGAATTATTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGACCGTAGAGTTGGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAACTGGCGGAAAGGGCTCCGAGTAAGGTTATTACTCAGACGCTCGCCAAAATCAGTTCTGAAGACTCGAAAATCAGAATTTGAAAGTATTCTGGATGAAGATGATTCACCATCTCCTGTATCTATTGAACAAGAATCTCCTCAGTCAAATATTGCTGAACTAACTACTGATTTCAGTTCTGAGGAGAACTCAACATCATCTAAAAAGGGCTGGGGTCGAGGCCGTGGGAAGGGTCGTGGACGAGTTCATAACCATCTCGATCGTAGCTATAGCTTACCAGTTACAGCTATGCAATCGAGTAGTCAGATTCTATGTGAAGCATCGTCCAAACTCACTTCTAAGAGTCCGAGAATGCCGGATGGGACGAAAGGTTTCACCATGGGACGAGGCAAGCCATTAAATTCTAAATCTCTTTATCCTTTTCATATTGTCTTGACCTGTTCTTCGACGTGTTGGAAATCTGTGCAACCATCGGCGAGGGGACGAAAATCGCACGATTCCAGTTGTTGTAGGGTGTTTGCTGTCGTGTTGCACCTTACCATGGTTCACCATTGTGATTCCTTGGCCGCAACTGGATTTTTCCCAATGATCGTTGCTGCCATCTTCATAGAGGAATGGTGA 1446 43.64 MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKSEFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLYPFHIVLTCSSTCWKSVQPSARGRKSHDSSCCRVFAVVLHLTMVHHCDSLAATGFFPMIVAAIFIEEW 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2324879 2328449 + CmoCh02G004430.1 Cmo02g00443 376040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00443 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 273 IPR000504 GO:0003723
Cmo02g00443 481 Pfam La domain 112 169 IPR006630 -
Cmo02g00443 481 SMART la 106 186 IPR006630 -
Cmo02g00443 481 PANTHER LUPUS LA PROTEIN-RELATED 3 410 IPR045180 -
Cmo02g00443 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 290 IPR000504 GO:0003723
Cmo02g00443 481 SUPERFAMILY RNA-binding domain, RBD 186 293 IPR035979 GO:0003676
Cmo02g00443 481 SMART rrm1_1 201 284 IPR000504 GO:0003723
Cmo02g00443 481 MobiDBLite consensus disorder prediction 298 359 - -
Cmo02g00443 481 PANTHER LA-RELATED PROTEIN 6C 3 410 - -
Cmo02g00443 481 MobiDBLite consensus disorder prediction 1 28 - -
Cmo02g00443 481 Gene3D - 104 191 IPR036388 -
Cmo02g00443 481 MobiDBLite consensus disorder prediction 1 19 - -
Cmo02g00443 481 PRINTS Lupus La protein signature 115 132 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cmo02g00443 481 PRINTS Lupus La protein signature 172 185 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cmo02g00443 481 PRINTS Lupus La protein signature 194 210 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cmo02g00443 481 PRINTS Lupus La protein signature 141 156 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cmo02g00443 481 MobiDBLite consensus disorder prediction 315 345 - -
Cmo02g00443 481 ProSiteProfiles La-type HTH domain profile. 102 193 IPR006630 -
Cmo02g00443 481 SUPERFAMILY Winged helix DNA-binding domain 104 189 IPR036390 -
Cmo02g00443 481 Gene3D - 192 293 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00443 K15191 LARP7; La-related protein 7 - csv:101217948 622.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00443 Cmo-Chr2:2324879 Cmo02g00466 Cmo-Chr2:2504072 0 dispersed
Cmo20g00014 Cmo-Chr20:122103 Cmo02g00443 Cmo-Chr2:2324879 3.68E-06 dispersed
Cmo02g00443 Cmo-Chr2:2324879 Cmo03g01386 Cmo-Chr3:10144318 9.06E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00443 Cmo_Chr02 FPKM 146.446106 150.071548 89.484192 84.49469 54.728767 61.278683 46.766987 292.616882 297.838715 276.642975