Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00446 ATGGCTTCCATATTTTCTAACGTTATCGTTCTCTTCGTGTTAGCGTGCATGTCAACTCTAAGCTCGGCCGACCCGAGTTGGTTTAGGGCTCGTAATACCACTTTTCTTTTCAGTTCTAGGCATAAACGTCCCCGGTTCCCGCCACCACCATCACGATGTTTGCCACAACCACCATGGAGATGTCTGCCACCGTCACCACCACCATCACGACCACGACAACCTCGAACACCACCACCATCACGACCACAAAAACCTCGAACACCACCATCACGACCACGACAACCTCGAACACCACCACCACGACGGCCTAGAACACCACCACCGCGATGGTTTCCACCACTACCACCACGGCCTCGAACACCGCCATCATCACCATTGCCGACCCCACAAAATCCAAGAAAGATTATAGTGGGTGGTTCTAAATATTGGCGTCTTGGCTTTGACTATAATGATTGGATACTTAAGAATGGTCCATTTTATGTGAACGATATTCTAGTGTTCAAATACGATCCTCCGAACAGTTCAACTCCTCCTCATAATGTTTATTTGCTACCAAACATGCAAAGCTTGAACAAGTGTGATTTTAGAAGGGCTAAATTGGTGGCAAATTTAACACAAGGAAGTGGAAATGGGTTTAATTTTGTTCTTAAACAACAAAAAGCTTACTACTTTGCTTGTGGAGAAGGCAATGGCTTCCATTGCAACCTTGGATCCATGAAGTTCTCTATAACCCCACAATCAAGGTGTCTACCATCACCGCCACCACCATCACGACCGCCACGGATACCTCCACCACGACATGTGCCACCACCATCAAAACGACCACGAATACCTCCACCACGACAGGTGCCACCACCATTATCACCATCACCACCACCACCATCAAAACGACCACGAATACCTCCACCAAGACAGGTGCCACCATCGTCACCACCACCACCATCAAAACGACCACGAATACCTCCACCACGACCAATGCCACCACAACCAATGCCACCACCACCATCACTACCTCCATCACCATCACCATCCCCATCACCATCACCACCTCCATCACCGACTCCACAAATTCCAAGAAAAATCATCGTAGGTGGATCAGAACAATGGCGTCTTGGGTTTGACTATAATGATTGGGCACTAAAAAACGGACCCTTTTATCTAAACGATATTCTAGTATTCAAATACGATCGTACCCATAGCGTTTATTTGCTACCAAACATGCAAAGCTTGGTGGATTGTGACTTTGGAACAGCCAAAATGGTAGCAAATTTAACACAAGGAAGTGGAGATGGCTTTGAGTTTGTACTCAACCAGCAAAATCCTTACTACTTTGCTTGCGGTGAAGGCAATGGCTTCCATTGCAAACTTGGATCCATGAAGTTCTCTGTAACACCAATAGCTCAAGCTTGA 1410 46.74 MASIFSNVIVLFVLACMSTLSSADPSWFRARNTTFLFSSRHKRPRFPPPPSRCLPQPPWRCLPPSPPPSRPRQPRTPPPSRPQKPRTPPSRPRQPRTPPPRRPRTPPPRWFPPLPPRPRTPPSSPLPTPQNPRKIIVGGSKYWRLGFDYNDWILKNGPFYVNDILVFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACGEGNGFHCNLGSMKFSITPQSRCLPSPPPPSRPPRIPPPRHVPPPSKRPRIPPPRQVPPPLSPSPPPPSKRPRIPPPRQVPPSSPPPPSKRPRIPPPRPMPPQPMPPPPSLPPSPSPSPSPSPPPSPTPQIPRKIIVGGSEQWRLGFDYNDWALKNGPFYLNDILVFKYDRTHSVYLLPNMQSLVDCDFGTAKMVANLTQGSGDGFEFVLNQQNPYYFACGEGNGFHCKLGSMKFSVTPIAQA 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2337790 2339757 + CmoCh02G004460.1 Cmo02g00446 376043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00446 469 MobiDBLite consensus disorder prediction 248 357 - -
Cmo02g00446 469 Gene3D - 132 246 IPR008972 -
Cmo02g00446 469 ProSiteProfiles Phytocyanin domain profile. 133 247 IPR003245 GO:0009055
Cmo02g00446 469 Gene3D - 359 469 IPR008972 -
Cmo02g00446 469 PANTHER GLYCINE-RICH PROTEIN-LIKE 352 468 - -
Cmo02g00446 469 PANTHER GLYCINE-RICH PROTEIN-LIKE 2 249 - -
Cmo02g00446 469 Pfam Plastocyanin-like domain 373 457 IPR003245 GO:0009055
Cmo02g00446 469 MobiDBLite consensus disorder prediction 48 129 - -
Cmo02g00446 469 SUPERFAMILY Cupredoxins 134 245 IPR008972 -
Cmo02g00446 469 SUPERFAMILY Cupredoxins 359 465 IPR008972 -
Cmo02g00446 469 PANTHER GLYCINE-RICH PROTEIN-LIKE 2 249 - -
Cmo02g00446 469 PANTHER GLYCINE-RICH PROTEIN-LIKE 352 468 - -
Cmo02g00446 469 MobiDBLite consensus disorder prediction 246 359 - -
Cmo02g00446 469 MobiDBLite consensus disorder prediction 40 134 - -
Cmo02g00446 469 ProSiteProfiles Phytocyanin domain profile. 359 467 IPR003245 GO:0009055
Cmo02g00446 469 PRINTS Proline rich extensin signature 55 67 - -
Cmo02g00446 469 PRINTS Proline rich extensin signature 67 88 - -
Cmo02g00446 469 PRINTS Proline rich extensin signature 92 108 - -
Cmo02g00446 469 PRINTS Proline rich extensin signature 112 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00446 - - - cmos:111451078 265.388
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00446 Cmo-Chr2:2337790 Cmo01g01674 Cmo-Chr1:12638324 1.61E-06 dispersed
Cmo02g00446 Cmo-Chr2:2337790 Cmo02g00447 Cmo-Chr2:2341520 7.62E-31 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g462 . . Bda06g01042 . . . . . . . Cma02g00440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00446 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004690 1 1 0 1 1 1 4 0 0 0 1 0 2 0 1 2 0 3 0 1 1 4 0 3 2 1 2 1 2 6 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00446 Cmo_Chr02 FPKM 1.883699 1.448341 3.741448 2.782197 3.111113 3.620654 3.220643 5.404889 5.093709 6.353872