Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00452 ATGGCCCAGCCTTCCAACGCTGCTGATCTCAATCCTCAAACCCCTCACCCTCACCATCAATGGTATCAACAACAACGACAGTATCAGCAGCAATGGATGGCGGTGCAGTACCCTGCCGCCGCCATGGCCATGATGCAACAACAGCAGATGATGATGTATCCTCCTCAGCATTACGTGGCGTATTCTCACCATCCTTATCAACAGCAGCAACAGCCACAGCAGCAGCCACCGCCGTCGCAGCAGCAACAGCAGCAACCTCAGTCGCAGCGACCTCGCAGGCAGGGGTCAACGGACGACGTTAAGACGCTTTGGATTGGTGACCTTCAGGCCTGGATGGACGAGACCTATCTCCATAACTGTTTCGCTCACACCGGCGAGGTTTTCTCTGTTAAGGTCATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCACATGCAACAGCTGATAAAGTGTTGCAGAACTATAATGGTGCTATGATGCCAAACACAGATCTGCCTTTCCGTCTCAATTGGGCAACCTTTAGTGGAAATGATAGGCGACCGGACACTGGTTCTGACCTATCTATATTTGTTGGTGATTTGGCTGCTGATGTAACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAAATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGGCGTTCAAAGGGTTATGGATTTGTCAGGTTTGGTGATGAAAATGAAAAGTCCAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCTTCACAGGCTTTAGTTCTGGCTGGTGGACATGCAAATGGCATGGCTGTTCAGGGACCACAAGATGGCGAGTCGAACAACACGACTATATTTGTTGGCGGCCTTGATTCTGATGTTAGTGATGAAGATCTCAAGCAACCTTTCTCTAAATTTGGTGAGATTGTCTCTGTGAAAATTCCTATTGGAAAGGGATGTGGATTTGTGCAGTTTGCCAACAGGTATTCTTCTTATTTTTCTGTGGAGCTTTCTGTCGTTAAATATGCAGCTTCTATTGCCGATCTTTACATCTCGCAAGTAATTAGAGGTTACAAAAAGGCAAGGTCACTGGTCAAGTTGGATTGA 1191 45.68 MAQPSNAADLNPQTPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVAYSHHPYQQQQQPQQQPPPSQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDETYLHNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAMMPNTDLPFRLNWATFSGNDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGDENEKSRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGPQDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGEIVSVKIPIGKGCGFVQFANRYSSYFSVELSVVKYAASIADLYISQVIRGYKKARSLVKLD 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2362482 2366746 - CmoCh02G004520.1 Cmo02g00452 376049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00452 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 396 IPR000504 GO:0003723
Cmo02g00452 396 Gene3D - 181 288 IPR012677 -
Cmo02g00452 396 SUPERFAMILY RNA-binding domain, RBD 194 360 IPR035979 GO:0003676
Cmo02g00452 396 SMART rrm1_1 102 175 IPR000504 GO:0003723
Cmo02g00452 396 SMART rrm1_1 195 269 IPR000504 GO:0003723
Cmo02g00452 396 SMART rrm1_1 312 380 IPR000504 GO:0003723
Cmo02g00452 396 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 358 - -
Cmo02g00452 396 MobiDBLite consensus disorder prediction 64 93 - -
Cmo02g00452 396 Gene3D - 100 180 IPR012677 -
Cmo02g00452 396 Gene3D - 298 363 IPR012677 -
Cmo02g00452 396 MobiDBLite consensus disorder prediction 1 23 - -
Cmo02g00452 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 273 IPR000504 GO:0003723
Cmo02g00452 396 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 19 358 - -
Cmo02g00452 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 357 IPR000504 GO:0003723
Cmo02g00452 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 266 IPR000504 GO:0003723
Cmo02g00452 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Cmo02g00452 396 CDD RRM2_SECp43_like 193 272 - -
Cmo02g00452 396 CDD RRM1_SECp43_like 102 182 - -
Cmo02g00452 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 181 IPR000504 GO:0003723
Cmo02g00452 396 SUPERFAMILY RNA-binding domain, RBD 67 186 IPR035979 GO:0003676
Cmo02g00452 396 MobiDBLite consensus disorder prediction 64 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00452 - - - cmax:111499959 598.201
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00452 Cmo20g00899 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00452 Cmo-Chr2:2362482 Cmo09g00205 Cmo-Chr9:942757 1.44E-135 dispersed
Cmo02g00452 Cmo-Chr2:2362482 Cmo20g00899 Cmo-Chr20:4559291 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00452 Cmo_Chr02 FPKM 0.402339 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.44483