Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00477 ATGGACACTCTCTTTGTCCCCATCACCTTCTCCAAACCTATTCATTCTTTACTCACCCGCACCACCAACGCCGGAGCTCGATCCAGGATCGGACCTGTTTCCTGCTTCTCCCTGCGTTCTTCTGTAATTCGGCTCAAGCGCTTCCGTTGCGCTGCCGATGCCTCCGATCACCGGCACGGCCACCACCACCACCACCATAGCTGTCAGCACCATTGCGGTGGTGACGGTGATGGAGTGGAGCTGACTGGAGCTCAGAAGGCGTTTGTTCGATTTGCCGAAGCTATTAGGTGGACGGACTTGGCGAATTATTTGCGGGAGCATCTACACTTATGTTGCGGTTCTGCTGCTTTGTTTATCACTGCGGCTGCATGTCCTTATTTGGTGCCTAAACCTGCTGTGAAGCTTCTACAGAATGTTTTCATTGCTGTTGCTTTCCCTTTAGTCGGGGTCTCTGCTTCTCTTGATGCTCTTACTGATATAAGTGGTGGGAAAGTAAACATCCATGTACTAATGGCCCTTGCAGCCTTTGCATCAATATTTATGGGGAACCCCTTGGAGGGAGGACTACTTCTTGTGATGTTTAATCTGGCTCATATTGCTGAAGAGTATTTCACAAAGCAATCAATGACTGACGTTAAAGAGTTGAAGGAAAGTCATCCAGATTTTGCCCTTGTTCTGGATATGAATGATGATAACCTTCCTGATACTTCAGATCTGGAGCATCGAAAGGTGCCCGTGCGTGATATTGAAGTGGGCTCATATATCATGGTGGGAGCTGGTGAGTCTGTCCCCGTAGATTGTGAGGTTTATCATGGTTGTGCTACGATCACTGTTGAGCACTTAACAGGAGAAATCAAACCATTGCAAATAAAGGTTGGGCAAAGAGTACCAGGTGGAGCAAGAAATTTGGACGGTAGGATCATAGTGAAGGCTACAAAAACATGGGAAGAGTCAACACTTAGCAGGATTGTGCAGTTGACTGAAGAAGCACAACTTAATAAACCAAAACTACAGAGGTGGCTTGATGAATTTGGTGAGAATTACAGCAAAGTGGTTGTAGTTTTATCTGTGGCTGTTGCCCTCATTGGACCATTATTATTCAAGTGGCCCTTTATTTGCACACCAGGTTTCAGAGGATCAGTTTATAGAGCGCTTGGGTTCATGGTAGCCGCATCACCATGTGCACTGGCTGCAGCTCCATTGGCATACGCTATTGCAATAAGTTCATGTGCAAGAAAGGGTATACTTCTGAAAGGTGGACATGTGCTTGATGCTATGGCTTCTTGTGACACCGTTGCATTTGATAAAACCGGGACATTGACTACAGGAGGACTTGTATTTAAAGCCATAGAACCCATTTATGGGCATAAGATTGGAGGCGATAATTCACATTTGGCTTCCTGTTGCATACCCAGCTGTGAAAAAGAAGCCCTTGCTGTTGCAGCTGCCATGGAAAAGGGTACTACTCACCCAATTGGAAGAGCTGTTGTAGATCATAGTGTGGGGAAAAACCTTCCTTCTATTTCTGTTGAAAGTTTCGAATATTTCCCTGGAAGAGGTCTCATCGCAACTTTGCATGGCATTAAGTCAGGAATTGGAGGTCCATTGCGGAAAGCATCCCTTGGTTCTGTGGATTTCATCACTTCCTTTTGCAAGTCCGAAAACGAATCAAGGAAGATCAAGGAAGCTGTTCGAGCATCATCATATGGAAGCGAATTTGTTCATGCTGCTCTTTCAGTTGATCAGAAGGTAACACTGATTCACCTCGAGGATCAGCCTCGAGCTGGCGTCTTAGATGCAATAGCAGAACTACAAGATCAGGCAAAACTCCGTGTTATGATGTTAACTGGTGATCATGATTCAAGTGCATGGAAAATTGCAAATGCTGTGGGAATAGATGAAGTTTACTACAGTCTTAAGCCTGAGGATAAACTTGCTCATGTGAAGGAAATTTCGAGGGAGAAGGGTGGTGGTCTGATCATGGTAGGCGAGGGTATAAACGATGCACCTGCACTTGCTGCAGCTACTGTAGGAATAGTTCTTGCCTGTCGTGCAAGCGCGACTGCTACAGCTGTCGCGGATGTCCTTCTTCTTCAAGATAGTATTTCCGGTGTTCCATTCTGTATTGCCAAATCTCGTCAGACGACTGCGCTGGTCAAGCAAAATGTTACCCTTGCCTTGTCGTCTATCCTTTTAGCCTCTCTCCCATCCATTTTGGGGTTTCTTCCCTTGTGGCTAACGGTCCTTCTACACGAGGGTGGTACTCTCCTGGTTTGCCTGAACTCCATTCGTGCTCTAAATCATCCCTCATGGTCATGGAAGCAAGATTTTCAAAATCTGATCCACAACGCCAGATCTAGTCTGCACACCACGCCCGAACCTAGCTCAGGTACCATCCGAACTGCATCATCATAA 2415 46.21 MDTLFVPITFSKPIHSLLTRTTNAGARSRIGPVSCFSLRSSVIRLKRFRCAADASDHRHGHHHHHHSCQHHCGGDGDGVELTGAQKAFVRFAEAIRWTDLANYLREHLHLCCGSAALFITAAACPYLVPKPAVKLLQNVFIAVAFPLVGVSASLDALTDISGGKVNIHVLMALAAFASIFMGNPLEGGLLLVMFNLAHIAEEYFTKQSMTDVKELKESHPDFALVLDMNDDNLPDTSDLEHRKVPVRDIEVGSYIMVGAGESVPVDCEVYHGCATITVEHLTGEIKPLQIKVGQRVPGGARNLDGRIIVKATKTWEESTLSRIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPGFRGSVYRALGFMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDAMASCDTVAFDKTGTLTTGGLVFKAIEPIYGHKIGGDNSHLASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKNLPSISVESFEYFPGRGLIATLHGIKSGIGGPLRKASLGSVDFITSFCKSENESRKIKEAVRASSYGSEFVHAALSVDQKVTLIHLEDQPRAGVLDAIAELQDQAKLRVMMLTGDHDSSAWKIANAVGIDEVYYSLKPEDKLAHVKEISREKGGGLIMVGEGINDAPALAAATVGIVLACRASATATAVADVLLLQDSISGVPFCIAKSRQTTALVKQNVTLALSSILLASLPSILGFLPLWLTVLLHEGGTLLVCLNSIRALNHPSWSWKQDFQNLIHNARSSLHTTPEPSSGTIRTASS 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2601591 2611671 + CmoCh02G004770.1 Cmo02g00477 376074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00477 804 SFLD C1.7: P-type atpase like 415 715 - -
Cmo02g00477 804 ProSitePatterns E1-E2 ATPases phosphorylation site. 435 441 IPR018303 -
Cmo02g00477 804 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 167 764 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cmo02g00477 804 SUPERFAMILY HAD-like 431 762 IPR036412 -
Cmo02g00477 804 PRINTS P-type cation-transporting ATPase superfamily signature 433 447 - -
Cmo02g00477 804 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Cmo02g00477 804 PRINTS P-type cation-transporting ATPase superfamily signature 608 618 - -
Cmo02g00477 804 PRINTS P-type cation-transporting ATPase superfamily signature 662 681 - -
Cmo02g00477 804 PRINTS P-type cation-transporting ATPase superfamily signature 686 698 - -
Cmo02g00477 804 SUPERFAMILY Calcium ATPase, transduction domain A 241 326 IPR008250 -
Cmo02g00477 804 SFLD p-type atpase 415 715 IPR044492 -
Cmo02g00477 804 Pfam haloacid dehalogenase-like hydrolase 430 675 - -
Cmo02g00477 804 Gene3D - 205 331 - -
Cmo02g00477 804 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 27 789 - -
Cmo02g00477 804 SUPERFAMILY Calcium ATPase, transmembrane domain M 169 746 IPR023298 -
Cmo02g00477 804 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 742 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo02g00477 804 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 241 454 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo02g00477 804 Gene3D - 444 593 IPR023299 GO:0000166
Cmo02g00477 804 Gene3D - 426 713 IPR023214 -
Cmo02g00477 804 Pfam E1-E2 ATPase 240 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00477 Cmo-Chr2:2601591 Cmo02g00508 Cmo-Chr2:2797137 0 dispersed
Cmo02g00477 Cmo-Chr2:2601591 Cmo05g00742 Cmo-Chr5:3902126 3.11E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00477 K01534 - csv:101221102 1377.84