Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00478 ATGATTTCCGTTGCCCAATTGAGCGACGGCGAAAAGCCCAAACTCTCCTCATCTCCGCCGCCACGTGTTTTCCGATCGAAATTGCCGGATATTACAATCCCCGACCATCTCCCTCTTCACGATTATTGCTTTGAGAAAATCTCTGAATTTTCCGACCGCCCATGTTTGATCGTCGGCGCCACCGGAAAATCCTATTCCTTCTCCGACACCCACTTGTTCTCCAAGAGGGCCGCCGCCACTTTCTCTAAACTTGGCGTTAAAAAAGGGGATTTTATTATGATTCTTCTCAAGAACTCTGCTGAATTTGTTTTTTCCTTTATGGGTTCGTCGATGATTGGCAGTGTCGCCACCACTGCTAATCCGTACTACACGGCGGCGGAGATTTCCAAGCAATTGAAGATGTCGGGTGCTAAATTGGTGGTTACTTACTCGCATTGTGTTGACAAGCTCCGGGAATCTGATGTGGATCTCACCATTGTTACCGTCGATGATCCACCGGAGAATTGTTTGAGCTTCTCGATGGTTTACGATGCCGATGAAAATGATGTCCCGTTCGTGGAGATTGACTGGAATGACGCTGTTTCGTTGCCGTTCTCCTCTGGCACGACGGGGACTCCGAAGGGTGTGGTTTTGACCCATAAGAGTATGGTGTCGAGTATAGCTCAACAGGTAGATGGAGAGAATCCGAACATATACTTGGGAACGAACGACGTGGTTTTATGTGTGCTTCCGATGTTCCACATATTCTCATTGAGTAGCATAGTTTTGATTTCGATTCGATCGGGAGCAACAATATTATTGATAGAGAAGTTCGAGATTGAGACGTCAATGAGCCTGATAGAGAGGCATGGGGTGACGGTGGCAACCGTGGTGCCGCCGATGGTGTTGATGATGGTGAAGAATCCAAAGGTGGCGGATTTCAACCTAAGCTCGATCAGAATGGTGATTTCAGGGGCGGCGCCGCTAGGAAAGCAGATAGAGGAGGCCCTCATGGAAAGGATCCCTCAAGCAGTTATTGGTCAAGGTTATGGGATGACGGAAGCAGGTCCGGTATTGAGTATGTGCACGGCTTTTGCGAAAGAGCCTCCGATGCCAACAAAAATAGGGTCGTGTGGGAGAGTTGTGAGAAACTCAGAGCTCAAAATCATTGACCCAAAGACCGGTGTCTCCCTTACCTATAATCAACCCGGAGAGATCTGTATTCGCGGCCCACAAATTATGAAAGGATATTTGAACGACCCAGTGGCCACGTCATTGACAGTCGACGTGGAGGGGTGGCTTCACACGGGTGACATTGGATACATTGACGAAGAAGAAGAAATATTTATTGTTGACCGGATCAAGGAGATTATCAAATATAAGGGTTTCCAGGTAGCACCGGTCGAGTTAGAATCTCTTCTTCTAACTCATCCATCTATTATGGAGGTCGCTGTCGTTGCGGAAAATGATGAAATTGCTGGGGAAGTTCCAGTGGCCTTCGTAGTTTGTTCAGCTGGTAATCAACTTACCCAGGAAGAAGTAAAAGAATTCATTGCAAAGCAGGTTGTGTTCTACAAGAGATTGCACCGAGTTTATTTTGTACCCACGATTCCAAAATTGCCCTCTGGAAAGATCTTGAAAAAAGATCTCAAAGCCAAGCTCTCGAACTCACCTAAAGCTACAAAAATGAAAGAGATAGGGAGAGATTAA 1689 46.71 MISVAQLSDGEKPKLSSSPPPRVFRSKLPDITIPDHLPLHDYCFEKISEFSDRPCLIVGATGKSYSFSDTHLFSKRAAATFSKLGVKKGDFIMILLKNSAEFVFSFMGSSMIGSVATTANPYYTAAEISKQLKMSGAKLVVTYSHCVDKLRESDVDLTIVTVDDPPENCLSFSMVYDADENDVPFVEIDWNDAVSLPFSSGTTGTPKGVVLTHKSMVSSIAQQVDGENPNIYLGTNDVVLCVLPMFHIFSLSSIVLISIRSGATILLIEKFEIETSMSLIERHGVTVATVVPPMVLMMVKNPKVADFNLSSIRMVISGAAPLGKQIEEALMERIPQAVIGQGYGMTEAGPVLSMCTAFAKEPPMPTKIGSCGRVVRNSELKIIDPKTGVSLTYNQPGEICIRGPQIMKGYLNDPVATSLTVDVEGWLHTGDIGYIDEEEEIFIVDRIKEIIKYKGFQVAPVELESLLLTHPSIMEVAVVAENDEIAGEVPVAFVVCSAGNQLTQEEVKEFIAKQVVFYKRLHRVYFVPTIPKLPSGKILKKDLKAKLSNSPKATKMKEIGRD 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2613807 2617457 + CmoCh02G004780.1 Cmo02g00478 376075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00478 562 Pfam AMP-binding enzyme 46 453 IPR000873 -
Cmo02g00478 562 Pfam AMP-binding enzyme C-terminal domain 462 537 IPR025110 -
Cmo02g00478 562 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 22 546 - -
Cmo02g00478 562 CDD 4CL 33 543 - -
Cmo02g00478 562 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Cmo02g00478 562 Gene3D - 448 550 IPR045851 -
Cmo02g00478 562 Gene3D - 18 447 IPR042099 -
Cmo02g00478 562 PANTHER 4-COUMARATE--COA LIGASE 3 22 546 - -
Cmo02g00478 562 MobiDBLite consensus disorder prediction 1 23 - -
Cmo02g00478 562 SUPERFAMILY Acetyl-CoA synthetase-like 27 549 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00478 Cmo-Chr2:2613807 Cmo08g00565 Cmo-Chr8:3461332 0 dispersed
Cmo02g00478 Cmo-Chr2:2613807 Cmo05g00699 Cmo-Chr5:3587233 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00478 K01904 - csv:101221344 863.603