Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00504 ATGGCGGTGGAGCTTCTCTCAGCCTACACCAACGCCCATCTCTCCGCCGCAATGGACCAAGACTCCGCCGTCCATGAAGCGGCCTCCGGTATCCACACCCTCAAAAAGCTCATCTCATTACTCTCCCACTCCCCCCCTTCTAACCTGGACTCCGATTGCCAAGCCGTTGCTAACGCCGCCGTCTCCCATTTCAAAAAGGCCATTTCTCTCCTCGGCCACTCCCCTCGTACCGGCCACGCTCGATTCCGCCGCGCCCCTTTAGATTCCTCTCAAATTTACAACGCAACCCCCATTCAGCAAATCCCTCCGCCGCCCCTTGAATCTGCCACCACCATTAATTTCTCTCATTCCTCGTTTCCCGCCGCCGACTCTGAAATTAACCTCCAACACCAACCCTCTTCCTCTTCTTTTCAAATCACTGATCTCTCCAGGGTTTCCTCTGTTGTCTCTAAGCCCTCTTCTGGCTCCAAGAGAAAGTGCGGCTCTGAAAATTTGGGCTCTGGGAAGTGCGGCGAATCCTCCGGTGGTCGATGCCATTGCTCCAAGAAGAGCAGAAAAATGAGGTTCAAAAGAGTGGTGAGAGTTCCAGCTATTAGCTCAAAGAACGCTGATATCCCTCCTGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTATAAATGCAGCAGTTTAAGAGGATGCCCTGCTAGAAAACATGTGGAGAGAGCTTCAGATGATCCATCTATGTTAATAGTGACATATGAAGGCGATCATAATCACTCTCAATCAGTGGCAGAGGCCTCAAGTCTCATCCTTGAATCATGGTGA 840 50.6 MAVELLSAYTNAHLSAAMDQDSAVHEAASGIHTLKKLISLLSHSPPSNLDSDCQAVANAAVSHFKKAISLLGHSPRTGHARFRRAPLDSSQIYNATPIQQIPPPPLESATTINFSHSSFPAADSEINLQHQPSSSSFQITDLSRVSSVVSKPSSGSKRKCGSENLGSGKCGESSGGRCHCSKKSRKMRFKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2757901 2759333 - CmoCh02G005040.1 Cmo02g00504 376101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00504 279 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 17 278 - -
Cmo02g00504 279 Pfam WRKY DNA -binding domain 208 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g00504 279 Pfam Plant zinc cluster domain 157 204 IPR018872 -
Cmo02g00504 279 ProSiteProfiles WRKY domain profile. 201 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g00504 279 MobiDBLite consensus disorder prediction 148 168 - -
Cmo02g00504 279 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 278 IPR044810 GO:0003700
Cmo02g00504 279 SUPERFAMILY WRKY DNA-binding domain 202 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo02g00504 279 SMART WRKY_cls 206 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g00504 279 Gene3D WRKY domain 191 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00504 Cmo03g00982 CCT
Cmo02g00504 Cmo03g00982 ECH
Cmo02g00504 Cmo20g00978 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00504 Cmo-Chr2:2757901 Cmo03g00982 Cmo-Chr3:7396973 5.09E-105 dispersed
Cmo02g00504 Cmo-Chr2:2757901 Cmo20g00978 Cmo-Chr20:5451258 3.75E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9222 PF03106 WRKY 2.40E-26 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00504 - - bhj:120089490 488.804