Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00504 | ATGGCGGTGGAGCTTCTCTCAGCCTACACCAACGCCCATCTCTCCGCCGCAATGGACCAAGACTCCGCCGTCCATGAAGCGGCCTCCGGTATCCACACCCTCAAAAAGCTCATCTCATTACTCTCCCACTCCCCCCCTTCTAACCTGGACTCCGATTGCCAAGCCGTTGCTAACGCCGCCGTCTCCCATTTCAAAAAGGCCATTTCTCTCCTCGGCCACTCCCCTCGTACCGGCCACGCTCGATTCCGCCGCGCCCCTTTAGATTCCTCTCAAATTTACAACGCAACCCCCATTCAGCAAATCCCTCCGCCGCCCCTTGAATCTGCCACCACCATTAATTTCTCTCATTCCTCGTTTCCCGCCGCCGACTCTGAAATTAACCTCCAACACCAACCCTCTTCCTCTTCTTTTCAAATCACTGATCTCTCCAGGGTTTCCTCTGTTGTCTCTAAGCCCTCTTCTGGCTCCAAGAGAAAGTGCGGCTCTGAAAATTTGGGCTCTGGGAAGTGCGGCGAATCCTCCGGTGGTCGATGCCATTGCTCCAAGAAGAGCAGAAAAATGAGGTTCAAAAGAGTGGTGAGAGTTCCAGCTATTAGCTCAAAGAACGCTGATATCCCTCCTGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTATAAATGCAGCAGTTTAAGAGGATGCCCTGCTAGAAAACATGTGGAGAGAGCTTCAGATGATCCATCTATGTTAATAGTGACATATGAAGGCGATCATAATCACTCTCAATCAGTGGCAGAGGCCTCAAGTCTCATCCTTGAATCATGGTGA | 840 | 50.6 | MAVELLSAYTNAHLSAAMDQDSAVHEAASGIHTLKKLISLLSHSPPSNLDSDCQAVANAAVSHFKKAISLLGHSPRTGHARFRRAPLDSSQIYNATPIQQIPPPPLESATTINFSHSSFPAADSEINLQHQPSSSSFQITDLSRVSSVVSKPSSGSKRKCGSENLGSGKCGESSGGRCHCSKKSRKMRFKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2757901 | 2759333 | - | CmoCh02G005040.1 | Cmo02g00504 | 376101 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00504 | 279 | PANTHER | WRKY TRANSCRIPTION FACTOR 7-RELATED | 17 | 278 | - | - | |
Cmo02g00504 | 279 | Pfam | WRKY DNA -binding domain | 208 | 264 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00504 | 279 | Pfam | Plant zinc cluster domain | 157 | 204 | IPR018872 | - | |
Cmo02g00504 | 279 | ProSiteProfiles | WRKY domain profile. | 201 | 267 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00504 | 279 | MobiDBLite | consensus disorder prediction | 148 | 168 | - | - | |
Cmo02g00504 | 279 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 17 | 278 | IPR044810 | GO:0003700 | |
Cmo02g00504 | 279 | SUPERFAMILY | WRKY DNA-binding domain | 202 | 266 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00504 | 279 | SMART | WRKY_cls | 206 | 266 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00504 | 279 | Gene3D | WRKY domain | 191 | 267 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00504 | Cmo03g00982 | CCT | |
Cmo02g00504 | Cmo03g00982 | ECH | |
Cmo02g00504 | Cmo20g00978 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00504 | Cmo-Chr2:2757901 | Cmo03g00982 | Cmo-Chr3:7396973 | 5.09E-105 | dispersed | |
Cmo02g00504 | Cmo-Chr2:2757901 | Cmo20g00978 | Cmo-Chr20:5451258 | 3.75E-176 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9222 | PF03106 | WRKY | 2.40E-26 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00504 | - | - | bhj:120089490 | 488.804 |