Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00508 ATGGGAACCCTCTCCTTCCCAATTGCGTCCTCCAAACCCCGCCTGTTACCGTCTCGGAGCCGAATTGCATTTTCAAACCCTTCTCTTCAACCATCTTTCCCTTCTTCTGCGTTTTCCGTACCTAATTTTCCCAATCTCCACCTTCGGCGGCTTGTTCTCTGCGCCACAGCGGCAAATGATCATTCCAATCACGATGAACACCATCGTGTTCATAATCATCACCATGGTCACCACCATCACCATGGTCACCACCATTGCGATCATGATGCGGAGCTGACTGGGCCTCAGAGAGCGCTGATTGGATTCGCTAAAGCTATTAGATGGACGGACTTGGCGAATTATTTGAGGGAACATTTGCAATTATGTTGCTGCTCAATGGCTTTGTTTGTAGCTGCTGCTGTTTGCCCTTATTTGGTGCCGAAACCATTTGTGAAGCCTTGCCAAAATGCTCTCATTGCCATTGCTTTTCCTTTGGTCGGGGTCTCCTCATCCCTTGATGCTTTAACTGATATTAGTGGAGGAAAAGTAAACATCCATGTACTTATGGCTCTTGCAGCCTTTGCATCCATCTTTATGGGGAACGCCTTGGAAGGAGGGATATTGCTTGGCATGTTTAATTTGTCTCACATTGCGGAAGAGTATTTTATAAGTCGTGCAATGATTGATGTCAAAGAGTTGAAGGAAAGTTATCCAGATTCTGCCCTTGTTTTAGATACAAATGAGGGTAAGCTTCCAAATATTGCAGATTTGTCCTACCAGAAGGTGCCTGTCCATGATGTACAAGTGGACTCCTATCTATTGGTTGGTGCTGGTGAGTCTGTTCCTGTAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACTATTGAGCACCTAACAGGTGAAATCAAACCTTTGGAGATTACGGTGGGAGACAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTTAAGGCCACAAAGACCTGGAAAGAGTCGACGTTGAGCCGAATAGTGAACTTGACTGAAGAGGCACAACTGAATAAACCAAGACTTCAGAGGTGGCTGGATGAATTTGGCGAGCATTATAGCAAAGCAGTTGTGGTTTTGTCCATTGCTGTTGCGCTTGTTGGTCCAATGTTATTCAAGTGGCCATTTATTGGTACATCAGGTTCTGTTACAAGTTCACTAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTAGCAGCATCACCTTGTGCTTTGGCCGTTGCACCATTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGCCATGTATTAGATGCTTTATCTTCTTGTCACACTATAGCATTTGATAAAACTGGGACGTTGACTACTGGAAGCCTTATTTTCAAAGCAATTGAACCAATTTACGGACATCAGGTCAGAGAAAACGAATCAGACTCTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCACTTGCTGTAGCAGCTGCAATGGAGAAGGGTACTACCCACCCTATAGGAAGAGCTGTGGTTGACCATAGTTTGGGAAAAGACCTCCCTTCCTTTTCTGTCCAAAATTTGGAATATTTTCCGGGTAGAGGACTCGTTGCAATGCTGCAAGGTATTGAGTCAGGAACTGAAGGTGGGAAACTATTGAAAGCATCTCTGGGTTCCTTGGATTTCATCACGTCACTCTACAAATCAGATACCAAATCAAAAAAGATCAAAGAAGCTGCGAGCACGTCTTCGTATGGAAGTGAATTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTATCATTGCAGAATTAACGGATATAGCGAAACTTCATGTTATGATGTTGACTGGAGATCATGAATCAAGTGCAAGGAGAGTGGCAAAAGCAGTGGGCATCAAGGAAGTCTACTTCAGTCTAAAACCTGAAGATAAGCTTAGTCACGTGAAAAGTATCTCTAGGGAGCATGGAGGAGGGCTAATCATGGTGGGTGAAGGCATTAATGATGCACCAGCTCTTGCTGCTGCCACCGTGGGAATAGTGCTCGCTCAGCGTGCTAGTGCAACTGCTATAGCTGTGGCAGATGTTCTGTTGCTGCGGGATAACATTTCTGGTGTACCATTCTGCATCTCCAAGTCACGTCAGACGACTGCCCTAGTTAAACAGAATGCTAGTCTTGCCTTATTTTCAATATTTATCGCCTCCCTTCCCACAGTTTTAGGGTTTCTCCCTTTGTGGTTAACGGTACTTCTGCATGAAGGTGGTACTCTTCTCGTTTGCCTCAACTCCATACGCGCTCTGAATAATCCCAGTTGGTCCTGGAGGCAGGATTTAAGTCAATTGCTACTGAAGCTCAAATTAAGGGGCTCGCACCCAAGCCTTAATACCATCTCTACCACTGTACACTCTTCCCCTGTATAG 2475 45.09 MGTLSFPIASSKPRLLPSRSRIAFSNPSLQPSFPSSAFSVPNFPNLHLRRLVLCATAANDHSNHDEHHRVHNHHHGHHHHHGHHHCDHDAELTGPQRALIGFAKAIRWTDLANYLREHLQLCCCSMALFVAAAVCPYLVPKPFVKPCQNALIAIAFPLVGVSSSLDALTDISGGKVNIHVLMALAAFASIFMGNALEGGILLGMFNLSHIAEEYFISRAMIDVKELKESYPDSALVLDTNEGKLPNIADLSYQKVPVHDVQVDSYLLVGAGESVPVDCEVFQGSATVTIEHLTGEIKPLEITVGDRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLSIAVALVGPMLFKWPFIGTSGSVTSSLACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGHVLDALSSCHTIAFDKTGTLTTGSLIFKAIEPIYGHQVRENESDSGSCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDHSLGKDLPSFSVQNLEYFPGRGLVAMLQGIESGTEGGKLLKASLGSLDFITSLYKSDTKSKKIKEAASTSSYGSEFVHAALAVDGKVTLIHLEDRPHPGVSSIIAELTDIAKLHVMMLTGDHESSARRVAKAVGIKEVYFSLKPEDKLSHVKSISREHGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCISKSRQTTALVKQNASLALFSIFIASLPTVLGFLPLWLTVLLHEGGTLLVCLNSIRALNNPSWSWRQDLSQLLLKLKLRGSHPSLNTISTTVHSSPV 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2797137 2810186 - CmoCh02G005080.1 Cmo02g00508 376105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00508 824 MobiDBLite consensus disorder prediction 68 84 - -
Cmo02g00508 824 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 49 811 - -
Cmo02g00508 824 MobiDBLite consensus disorder prediction 63 88 - -
Cmo02g00508 824 PRINTS P-type cation-transporting ATPase superfamily signature 681 700 - -
Cmo02g00508 824 PRINTS P-type cation-transporting ATPase superfamily signature 705 717 - -
Cmo02g00508 824 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Cmo02g00508 824 PRINTS P-type cation-transporting ATPase superfamily signature 627 637 - -
Cmo02g00508 824 Pfam E1-E2 ATPase 248 431 - -
Cmo02g00508 824 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 178 783 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cmo02g00508 824 SFLD p-type atpase 433 734 IPR044492 -
Cmo02g00508 824 SUPERFAMILY Calcium ATPase, transduction domain A 251 337 IPR008250 -
Cmo02g00508 824 Gene3D - 444 732 IPR023214 -
Cmo02g00508 824 Pfam haloacid dehalogenase-like hydrolase 449 694 - -
Cmo02g00508 824 SFLD Haloacid Dehalogenase 433 734 - -
Cmo02g00508 824 SUPERFAMILY HAD-like 449 781 IPR036412 -
Cmo02g00508 824 SUPERFAMILY Calcium ATPase, transmembrane domain M 180 762 IPR023298 -
Cmo02g00508 824 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 252 476 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo02g00508 824 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 587 761 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo02g00508 824 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Cmo02g00508 824 Gene3D - 462 612 IPR023299 GO:0000166
Cmo02g00508 824 CDD P-type_ATPase_HM 122 783 - -
Cmo02g00508 824 Gene3D - 217 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00477 Cmo-Chr2:2601591 Cmo02g00508 Cmo-Chr2:2797137 0 dispersed
Cmo02g00508 Cmo-Chr2:2797137 Cmo05g00745 Cmo-Chr5:3933660 8.32E-55 dispersed
Cmo02g00508 Cmo-Chr2:2797137 Cmo10g00412 Cmo-Chr10:1870225 1.28E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00508 K01534 - jre:109009121 1140.95