Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00516 ATGGATATTCTCCTACTTTCAATTCCCCTCCTTCTACTTTCTCTCCTCTTCGCCTTCAACTTTCTCCAAACCCCTCATCGCCTCAACCTCCCACCAACACCACTCTTCTCCCTTCCACTAATAGGCCATTTCCATCTCCTCAAACACCCCCTCCACCGATCACTCCACGCCCTCTCACAAAAGCACGGCCATGTCATCTCACTCCGATTCGGCTCACGCCTTGTCGTAGTCATCTCCTCCCCCTCAGCCGTTCAAGAATGCTTCACAAAAAACGACATCATTCTCGCAAATCGCCCATTGCTCGACACCGGAAAGTACTTAGCATACAACCACACAACCCTCGCCGTCTCACCTTACGGCGAGCACTGGCGCAACCTCCGCCGGATTTGCTCCCTCGAGATATTCTCAACCAACCGCCTCAATATGTTCGTGGGTATCCGAGAAAATGAAGTGAAACGGTTGCTGAGGAAGTTATGTGGGGATTGGTCGGAAGAGTTTAGGGAAGTGGAATTGGAGCCGATGTTGTCGGATCTTACTTTCAACGTTGTTATGGGAATGGTGGGTGGAAGGAGGTTTTATGATGAGGGGTATTCGAAGAAGTTTAGAGATTTGGTGACACAAATTATGGCGCATGGTGGGTCGTCGAATCCGGGTGATTTCATACCCTTATGGAATTGGGTTGATCCAACTGGTTTTAAGAAGAGGATAATGAATCTTGCCCGAAGAGGAGATGAACTTCTTCAAGAACTAATTGATGAAGCTCGAGATGGAAAGGATGGAGGGAACACTATGATTCATCATTTACTTTGCTTGCAGAAAGATGAGCCGGAGTATTATAGTGACCTTATTATCAAAGGACTTATTCAAGTTATATTCTTAGCGGGGATTGACACGTCAGCTGTGACATTAGAATGGGCGCTATCGCATTTGCTCAACAATCCAGACGTGTTAAAGAAAGCAAGAGCTGAGATAGATGATTTGATAGGAAAAGAGCGGCTAGTGAATGAAAGTGATCTTCCAAATTTAAAGTATCTTCAAGGAATAATCTCAGAGACATTGCGGTTGAACCCAGCAGCTCCTCTTCTTGTGCCACACTGTGCATTTCAAGACTGCAAAATAGAAGGATATGATGTTCCTCGTGACACAATTGTGTTGATTAATACTTGGGCTATACATAGAGACCCAAATCTATGGGAAGATCCCACGGCGTTTAAACCAGAAAGACATGGTGACACGAGTGGAGCTGATTCTTACAAGCTACTACCATTTGGGTTGGGGCGGAGAGCTTGTCCTGGTGTGGGAATGGCGCAACGTGTGGTTGGCTTAGCTTTAGCTTCGTTGATACAAGGCTTTGAATGGGAAAGAGTGAGCAGCTCGTTGGTTGATATGAGTGAAGGTCAAGGGCTCACTATGCCCAAAGCTCAACCATTGGTAGCCAAGTGTAAACCACGACCAATCATGAAAGCCATTATGAACGTAGAAATTGATAATATTTGA 1497 45.76 MDILLLSIPLLLLSLLFAFNFLQTPHRLNLPPTPLFSLPLIGHFHLLKHPLHRSLHALSQKHGHVISLRFGSRLVVVISSPSAVQECFTKNDIILANRPLLDTGKYLAYNHTTLAVSPYGEHWRNLRRICSLEIFSTNRLNMFVGIRENEVKRLLRKLCGDWSEEFREVELEPMLSDLTFNVVMGMVGGRRFYDEGYSKKFRDLVTQIMAHGGSSNPGDFIPLWNWVDPTGFKKRIMNLARRGDELLQELIDEARDGKDGGNTMIHHLLCLQKDEPEYYSDLIIKGLIQVIFLAGIDTSAVTLEWALSHLLNNPDVLKKARAEIDDLIGKERLVNESDLPNLKYLQGIISETLRLNPAAPLLVPHCAFQDCKIEGYDVPRDTIVLINTWAIHRDPNLWEDPTAFKPERHGDTSGADSYKLLPFGLGRRACPGVGMAQRVVGLALASLIQGFEWERVSSSLVDMSEGQGLTMPKAQPLVAKCKPRPIMKAIMNVEIDNI 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2868811 2871239 - CmoCh02G005160.1 Cmo02g00516 376113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00516 498 Pfam Cytochrome P450 31 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 Gene3D Cytochrome P450 20 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS P450 superfamily signature 421 430 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS E-class P450 group I signature 346 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS E-class P450 group I signature 420 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 PRINTS E-class P450 group I signature 430 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 SUPERFAMILY Cytochrome P450 31 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g00516 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 423 432 IPR017972 GO:0005506|GO:0016705
Cmo02g00516 498 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 11 490 - -
Cmo02g00516 498 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 11 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00516 Cmo-Chr2:2868811 Cmo20g00991 Cmo-Chr20:5661890 0 dispersed
Cmo20g00987 Cmo-Chr20:5628950 Cmo02g00516 Cmo-Chr2:2868811 2.84E-71 dispersed
Cmo02g00516 Cmo-Chr2:2868811 Cmo03g00973 Cmo-Chr3:7332351 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00516 K13260 - mcha:111017884 753.436