Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00518 ATGGGGGTCTCATTACTTAAATTGCTTCTTAGACATATTTCATCATTTTTTCAACTTTCGTCTTCTGACTACATAAATTTACAACCGACTCTGAAGTACTACCATAAAATAGAAGGGGTTTTCAAACTTTTGAAGCCGATACTGGATGCAGTTGTTGATTCAGATATAGCTTCTGATGAAGAACTTATTAAGGCATTTGAAGAACTTGATCATTCAGTTGATGAACTAAGGGTGCTGTTTGAAAACTGGCAACCATTGTCGAGTAAAGTATACTTGGTACTGCAAGGTGAAGCATTAATAACAAAGATTGGGAAATCTAGCTTGGATATATTCCAGCTTCTTCGGTCTTCAAATGAAAATCTTCCGGAGGAATTAAGTTTATCATCTCTTGAGCACTGCGTCCAAAAGATTAAGCATATTGGAAGGGAAGAAATATCTTCTGTTATTAAAGATGCCATAAGGAATCAAGCAGAGGGCATTGCACCCCCCAGCTCAGATGTTTTGGTGAAACTTGCAGATTCCCTGAGCTTGAGATCAAACCAGGAGATCTTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAGAGTGCCGAACAAGCTGAACAAACCGGAGAAGCTGAGGACATCGATCAAATGGTTGCTCTTGTAACCCGTATGCATGAACGACTTCTTACGATAAAGCAATCCCAAAGTTCGGGTCCTGTATCGATACCTACTGATTTCTGCTGCCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAACGGGTTTTTATAAAAAATTGGATCGATATGGGGCTCAATGTTTGTCCAAAGACTAGACAGACGTTGGTTCACACGAATCTTATACCTAACTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTGAAGTTATCTGATCCCTCAAGGTCGGTGCTTGGTAGCTTCGAGTCTGATACCCATCGAGAACCCCTTTTTTCTCATTCCCCTCAGTCAGCCCGGTCTGTACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCTTTCTCTGAGGATTCCTTGTCCAATGATGCTGGAGATGAAAGAGGGATTGATGTTAGTAGGCTATTGCTTACAAGTACGGAAGATCAATCGGCCAAATTGGAAGAAAATGGTGGTGATTTGATTACTAAACCATCAATGTCGCCATCTAGAACCAATGTTCCAAATTCCAGTGAGGATGAACAGTCACATAGTCATAATAGGAAGGCCTCCACCTCGAGTGCAGTCTCAAATGCTAATCTCTCTCGAGGAACCTCAGGGGAAGCCAATGAATCTCCAAACGTGTCAACAAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTTCCTCAACTCCCAATCACATAGAACCAGAGCTTCCACCCAGATTAGCTGACTCAAGATCTCGAGGTAATATGATGTGGCTCCGACCATCAGAGAGGTTTGCCAGTAAAATAACTACACCATCTGCTAACGAAACAAGGCCAGATATTTCAGCTATCGAAGCACAAGTTCGGAAGGTGGTGGAGGAATTGAAGAGCAGTTCACTTGAAACTTTAAGAGGTGCTACGGCTGAATTGCGGCTACTGGCCAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGAGCCATTGAATATTTGGTTAATTTGCTTCTCTCTGCAGACTCGAAGATCCAGGAGAATGCTGTGACTGCTCTTCTAAACTTATCCATCAATGATAATAACAAAAATGCCATTGCTCAGGCAAATGCAATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGTCCGGAGGCAAAGGAGAACTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTGAGAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTGCTGGGTATTGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCTTTGTTTAACTTATCAATATTCCATGAAAACAAGGCTAGAATTGTCCAAGCTGGAGCCGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTTGCTGTGTTGGCAAATCTCGCCACAATTCCCGAGGGAAGGTCTGCGATTGGTCAGGAAGGTGGAATTCCCGTTCTCGTCGAGGTCGTGGAGTTGGGTTCTGCTCGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTTTGCACAACCAGCAGTAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCTGTGCCACCATTAGTGGCATTGTCCCAATCTGGTACTGCTAGAGCCAAAGAAAAGGCTCAAGCGCTTCTAAGCCATTTCAGAAGCCAGAGACATGGAAATTCAGGAAGAGGGTAA 2445 43.93 MGVSLLKLLLRHISSFFQLSSSDYINLQPTLKYYHKIEGVFKLLKPILDAVVDSDIASDEELIKAFEELDHSVDELRVLFENWQPLSSKVYLVLQGEALITKIGKSSLDIFQLLRSSNENLPEELSLSSLEHCVQKIKHIGREEISSVIKDAIRNQAEGIAPPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAEQTGEAEDIDQMVALVTRMHERLLTIKQSQSSGPVSIPTDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDMGLNVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSRSVLGSFESDTHREPLFSHSPQSARSVLGGTHRDGSSSLLSHSFSEDSLSNDAGDERGIDVSRLLLTSTEDQSAKLEENGGDLITKPSMSPSRTNVPNSSEDEQSHSHNRKASTSSAVSNANLSRGTSGEANESPNVSTNLTGYGSDAAGESKSEPLAAASSTPNHIEPELPPRLADSRSRGNMMWLRPSERFASKITTPSANETRPDISAIEAQVRKVVEELKSSSLETLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVNLLLSADSKIQENAVTALLNLSINDNNKNAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVRIGRSGAIGPLVELLGIGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2887263 2894217 + CmoCh02G005180.1 Cmo02g00518 376115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00518 814 Pfam Armadillo/beta-catenin-like repeat 562 599 IPR000225 GO:0005515
Cmo02g00518 814 Pfam Armadillo/beta-catenin-like repeat 644 681 IPR000225 GO:0005515
Cmo02g00518 814 Pfam Armadillo/beta-catenin-like repeat 601 640 IPR000225 GO:0005515
Cmo02g00518 814 SUPERFAMILY ARM repeat 531 803 IPR016024 -
Cmo02g00518 814 MobiDBLite consensus disorder prediction 331 363 - -
Cmo02g00518 814 MobiDBLite consensus disorder prediction 400 417 - -
Cmo02g00518 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 653 695 IPR000225 GO:0005515
Cmo02g00518 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 810 - -
Cmo02g00518 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 694 735 IPR000225 GO:0005515
Cmo02g00518 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 571 613 IPR000225 GO:0005515
Cmo02g00518 814 Gene3D - 511 810 IPR011989 -
Cmo02g00518 814 MobiDBLite consensus disorder prediction 327 370 - -
Cmo02g00518 814 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Cmo02g00518 814 SUPERFAMILY RING/U-box 224 313 - -
Cmo02g00518 814 Pfam U-box domain 237 307 IPR003613 GO:0004842|GO:0016567
Cmo02g00518 814 Coils Coil 180 210 - -
Cmo02g00518 814 PANTHER U BOX DOMAIN-CONTAINING 7 810 - -
Cmo02g00518 814 SMART arm_5 642 682 IPR000225 GO:0005515
Cmo02g00518 814 SMART arm_5 683 722 IPR000225 GO:0005515
Cmo02g00518 814 SMART arm_5 765 805 IPR000225 GO:0005515
Cmo02g00518 814 SMART arm_5 601 641 IPR000225 GO:0005515
Cmo02g00518 814 SMART arm_5 723 763 IPR000225 GO:0005515
Cmo02g00518 814 SMART arm_5 560 600 IPR000225 GO:0005515
Cmo02g00518 814 MobiDBLite consensus disorder prediction 425 462 - -
Cmo02g00518 814 MobiDBLite consensus disorder prediction 385 496 - -
Cmo02g00518 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 311 IPR013083 -
Cmo02g00518 814 CDD RING-Ubox_PUB 241 283 IPR045210 -
Cmo02g00518 814 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00518 Cmo07g00686 CCT
Cmo02g00518 Cmo20g00999 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00518 Cmo-Chr2:2887263 Cmo07g00686 Cmo-Chr7:3089791 1.98E-141 dispersed
Cmo04g02402 Cmo-Chr4:17891715 Cmo02g00518 Cmo-Chr2:2887263 8.49E-31 dispersed
Cmo15g00763 Cmo-Chr15:3745027 Cmo02g00518 Cmo-Chr2:2887263 1.70E-33 dispersed
Cmo02g00518 Cmo-Chr2:2887263 Cmo20g00999 Cmo-Chr20:5999322 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00518 - - csv:101212423 1329.69