Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00518 | ATGGGGGTCTCATTACTTAAATTGCTTCTTAGACATATTTCATCATTTTTTCAACTTTCGTCTTCTGACTACATAAATTTACAACCGACTCTGAAGTACTACCATAAAATAGAAGGGGTTTTCAAACTTTTGAAGCCGATACTGGATGCAGTTGTTGATTCAGATATAGCTTCTGATGAAGAACTTATTAAGGCATTTGAAGAACTTGATCATTCAGTTGATGAACTAAGGGTGCTGTTTGAAAACTGGCAACCATTGTCGAGTAAAGTATACTTGGTACTGCAAGGTGAAGCATTAATAACAAAGATTGGGAAATCTAGCTTGGATATATTCCAGCTTCTTCGGTCTTCAAATGAAAATCTTCCGGAGGAATTAAGTTTATCATCTCTTGAGCACTGCGTCCAAAAGATTAAGCATATTGGAAGGGAAGAAATATCTTCTGTTATTAAAGATGCCATAAGGAATCAAGCAGAGGGCATTGCACCCCCCAGCTCAGATGTTTTGGTGAAACTTGCAGATTCCCTGAGCTTGAGATCAAACCAGGAGATCTTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAGAGTGCCGAACAAGCTGAACAAACCGGAGAAGCTGAGGACATCGATCAAATGGTTGCTCTTGTAACCCGTATGCATGAACGACTTCTTACGATAAAGCAATCCCAAAGTTCGGGTCCTGTATCGATACCTACTGATTTCTGCTGCCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAACGGGTTTTTATAAAAAATTGGATCGATATGGGGCTCAATGTTTGTCCAAAGACTAGACAGACGTTGGTTCACACGAATCTTATACCTAACTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTGAAGTTATCTGATCCCTCAAGGTCGGTGCTTGGTAGCTTCGAGTCTGATACCCATCGAGAACCCCTTTTTTCTCATTCCCCTCAGTCAGCCCGGTCTGTACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCTTTCTCTGAGGATTCCTTGTCCAATGATGCTGGAGATGAAAGAGGGATTGATGTTAGTAGGCTATTGCTTACAAGTACGGAAGATCAATCGGCCAAATTGGAAGAAAATGGTGGTGATTTGATTACTAAACCATCAATGTCGCCATCTAGAACCAATGTTCCAAATTCCAGTGAGGATGAACAGTCACATAGTCATAATAGGAAGGCCTCCACCTCGAGTGCAGTCTCAAATGCTAATCTCTCTCGAGGAACCTCAGGGGAAGCCAATGAATCTCCAAACGTGTCAACAAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTTCCTCAACTCCCAATCACATAGAACCAGAGCTTCCACCCAGATTAGCTGACTCAAGATCTCGAGGTAATATGATGTGGCTCCGACCATCAGAGAGGTTTGCCAGTAAAATAACTACACCATCTGCTAACGAAACAAGGCCAGATATTTCAGCTATCGAAGCACAAGTTCGGAAGGTGGTGGAGGAATTGAAGAGCAGTTCACTTGAAACTTTAAGAGGTGCTACGGCTGAATTGCGGCTACTGGCCAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGAGCCATTGAATATTTGGTTAATTTGCTTCTCTCTGCAGACTCGAAGATCCAGGAGAATGCTGTGACTGCTCTTCTAAACTTATCCATCAATGATAATAACAAAAATGCCATTGCTCAGGCAAATGCAATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGTCCGGAGGCAAAGGAGAACTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTGAGAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTGCTGGGTATTGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCTTTGTTTAACTTATCAATATTCCATGAAAACAAGGCTAGAATTGTCCAAGCTGGAGCCGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTTGCTGTGTTGGCAAATCTCGCCACAATTCCCGAGGGAAGGTCTGCGATTGGTCAGGAAGGTGGAATTCCCGTTCTCGTCGAGGTCGTGGAGTTGGGTTCTGCTCGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTTTGCACAACCAGCAGTAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCTGTGCCACCATTAGTGGCATTGTCCCAATCTGGTACTGCTAGAGCCAAAGAAAAGGCTCAAGCGCTTCTAAGCCATTTCAGAAGCCAGAGACATGGAAATTCAGGAAGAGGGTAA | 2445 | 43.93 | MGVSLLKLLLRHISSFFQLSSSDYINLQPTLKYYHKIEGVFKLLKPILDAVVDSDIASDEELIKAFEELDHSVDELRVLFENWQPLSSKVYLVLQGEALITKIGKSSLDIFQLLRSSNENLPEELSLSSLEHCVQKIKHIGREEISSVIKDAIRNQAEGIAPPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAEQTGEAEDIDQMVALVTRMHERLLTIKQSQSSGPVSIPTDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDMGLNVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSRSVLGSFESDTHREPLFSHSPQSARSVLGGTHRDGSSSLLSHSFSEDSLSNDAGDERGIDVSRLLLTSTEDQSAKLEENGGDLITKPSMSPSRTNVPNSSEDEQSHSHNRKASTSSAVSNANLSRGTSGEANESPNVSTNLTGYGSDAAGESKSEPLAAASSTPNHIEPELPPRLADSRSRGNMMWLRPSERFASKITTPSANETRPDISAIEAQVRKVVEELKSSSLETLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVNLLLSADSKIQENAVTALLNLSINDNNKNAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVRIGRSGAIGPLVELLGIGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG | 814 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2887263 | 2894217 | + | CmoCh02G005180.1 | Cmo02g00518 | 376115 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00518 | 814 | Pfam | Armadillo/beta-catenin-like repeat | 562 | 599 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | Pfam | Armadillo/beta-catenin-like repeat | 644 | 681 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | Pfam | Armadillo/beta-catenin-like repeat | 601 | 640 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | SUPERFAMILY | ARM repeat | 531 | 803 | IPR016024 | - | |
Cmo02g00518 | 814 | MobiDBLite | consensus disorder prediction | 331 | 363 | - | - | |
Cmo02g00518 | 814 | MobiDBLite | consensus disorder prediction | 400 | 417 | - | - | |
Cmo02g00518 | 814 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 653 | 695 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 7 | 810 | - | - | |
Cmo02g00518 | 814 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 694 | 735 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 571 | 613 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | Gene3D | - | 511 | 810 | IPR011989 | - | |
Cmo02g00518 | 814 | MobiDBLite | consensus disorder prediction | 327 | 370 | - | - | |
Cmo02g00518 | 814 | ProSiteProfiles | U-box domain profile. | 236 | 310 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo02g00518 | 814 | SUPERFAMILY | RING/U-box | 224 | 313 | - | - | |
Cmo02g00518 | 814 | Pfam | U-box domain | 237 | 307 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo02g00518 | 814 | Coils | Coil | 180 | 210 | - | - | |
Cmo02g00518 | 814 | PANTHER | U BOX DOMAIN-CONTAINING | 7 | 810 | - | - | |
Cmo02g00518 | 814 | SMART | arm_5 | 642 | 682 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | SMART | arm_5 | 683 | 722 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | SMART | arm_5 | 765 | 805 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | SMART | arm_5 | 601 | 641 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | SMART | arm_5 | 723 | 763 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | SMART | arm_5 | 560 | 600 | IPR000225 | GO:0005515 | |
Cmo02g00518 | 814 | MobiDBLite | consensus disorder prediction | 425 | 462 | - | - | |
Cmo02g00518 | 814 | MobiDBLite | consensus disorder prediction | 385 | 496 | - | - | |
Cmo02g00518 | 814 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 236 | 311 | IPR013083 | - | |
Cmo02g00518 | 814 | CDD | RING-Ubox_PUB | 241 | 283 | IPR045210 | - | |
Cmo02g00518 | 814 | SMART | Ubox_2 | 240 | 303 | IPR003613 | GO:0004842|GO:0016567 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00518 | Cmo07g00686 | CCT | |
Cmo02g00518 | Cmo20g00999 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00518 | Cmo-Chr2:2887263 | Cmo07g00686 | Cmo-Chr7:3089791 | 1.98E-141 | dispersed | |
Cmo04g02402 | Cmo-Chr4:17891715 | Cmo02g00518 | Cmo-Chr2:2887263 | 8.49E-31 | dispersed | |
Cmo15g00763 | Cmo-Chr15:3745027 | Cmo02g00518 | Cmo-Chr2:2887263 | 1.70E-33 | dispersed | |
Cmo02g00518 | Cmo-Chr2:2887263 | Cmo20g00999 | Cmo-Chr20:5999322 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00518 | - | - | csv:101212423 | 1329.69 |