Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00525 ATGGCGGACGAGCAGCCTTCAGCCGCAAATCGCCGGAGGAGCCGAGGATCTGAGGCAACCGCTCGCCTTCAGGCTCTGGAACGTCTCAAAGCCATCCGCACTGGCGGCCGTCGATCAGAAGCCGGTGGTTTCCAAGTTAAGTTGGAGAACCCTATCTACGATACGATTCCCGAGGACGAGTATGATGCTCTTGTCGCAAAGCGGCGCGAAGAAGCCCGAGGGTTTATTGTTGACGACGACGGTCTTGGATATGGAGACGAAGGCGAGGAAGAGGATTGGTCCAAAGCTGGGATTTGTTTCTCCGATGAGTCTGATGGCGAGCCTGAGAAACCTAAGAAGAGGAAATCAGAGAAGAAAGAAGCGCAACCGAAGAAGCCCTCTTCTACTTCTCTGTCGGCGGCGGCTGCGATGATGGGGAAACAGAAGCTTTCTTCGATGTTCACTTCATCGATCTTCAGGAAAACGGGTAAAGATGATAAGGCTAAAGGGTTGGCTTGTGACAGTATTGTCGATGATGTGATTGCCGAATTTGCGCCGGATGAGACTGATAGAGAGCGGCGTAGAAAGGGGCAAATTGGAGCTACATCGATATCGAAAACATTTGCGCCTGTTTCTGCTATGAAATGCGAGGGAATAATTGCTCAGAGTCTTAATTTAACTGGTGGATCTGAATTGGTTAAGGGTACTGTAAACGGGAACTCTGGAATGACCAAGGATTTCACAAACAGTGATTTGGAGTCTGTGCAAGCTGATATAGAGATCCAGGGAAATGGTGAAACTAAGAAATTTGATTCAAAGGATAATTTAGATTCTGAAATGAATCTGGTTTCAGTTGGGCAATCTCATAATCCTTCGATCAAGGATGATGTAATTGAAGATAATATGCCAACTGTGGTAGAAACGAAGTCAGAAGCTTTAGTGAAGAAGGAGCCGGTTTGTACTTTGAATGCTATGATTAGCGATGTAAAAGACCCAGCTTTGAGTGCCACTGCGGGATGGCAAGCAGTGAGAAGTGAAGGGAGTGGAAATGCTGATTCTGCTGCAGATACTTCTGAAGATAAATCCCATTTTGATATTGACGCTGATGGCTCTCTGCCTTTCTATATGGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACCGTATATCTGTTTGGCAAGGTCAAAGCTGGAGATACGTACCACAGTTGTTGTGTGGTGGTGAAAAACGTGCAGAGATGCGTATATGCCATTCCAAGTGCCTCTTTTCTTCATTCGGATGAGATGTTGAAGCTTCAGAACGATGCCGAACAATCCCAGCTTTCTCCTACAGATCTGCGTACCAAGTTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATAGCTCAGCAGTTGCTAGATCTCAATGTTCCAACATTTAGCATGACACCCGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTACGGGGGAAAATTATGTTCTTAAGATTAATTACCCATTCAAGCATCCCCCACTTCCTGCTGATCTAAAAGGAGAATCCTTCTGTGCACTCTTAGGAACACATCGCAGTGCCTTGGAGCTTCTTCTCATTAAAAGGAAAATAAAGGGTCCCTCCTGGTTGTCAATTTCAAAATTTTCTTCCTGTCCTGGTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAATTGACTCTCCAAAAGATGTTCAGATTTCAACTTCATCAAGCAAAACTTTGGAGATTCCTCCTATGATTGTCACTGCAATAAACATAAAGACCATTATTAATGAAAAGCAGAATGTGAATGAAATTGTGTCTGCGTCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTAGCCACAGAATGGAAAAAGCCTGGTATGCTTAGACATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCACAGATAGAAATTCGAAGGCTGGATCAAATGTTTTAATCTGCGAGGGCAATGAACGAGCCTTGTTGAATCGATTAATGATTGAATTGTTCAAATTGGATAGTGATGTGCTGGTTGGACACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCTGCATGTGGTCCAAAATAGGTCGTCTTAAGCGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGGGCATTTTTGGGTCTGGAGCAAGTCCCGGAGTCATGTCTTGCATTGCTGGACGGCTCTTATGTGATACGTACTTGTCTTCCCGTGACCTATTGAAAGAGATTAGTTATTCTTTGACAGAGCTAGCAAAGACTCAACTTAACAAGGACCGCAAGGAAGTCACTCCTCACGATATTCCAAGAATGTACCATGCATCAGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACACGTCAGTTGACTAATATTAGTGGTAACCTCTGGGGAAGAAGTCTGCAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAGTATATTGTCCCCGACAAGTTTTCAACTTATGTGAAGGAGAAAAAGATGGTTAAAAAGAGAACGAATCATGGTTCTGAGGAAAAAAATCTTGATAATGTTGATTTAGATGATGCAAATATAGAAGCTCCCAATACTGAAAGTGGAAAAGGAAAAAAGGGATCCTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGAGGTTTATATGATAAATATATATTGCTCCTGGACTTCAACAGTCTGTATCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTCATTCCTCGTCTGCCGTCTAGTAAAGTCACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCATCTGGTATCAAGCTTCAGCAACTTGACATTCAACAGCAGGCATTAAAGCTCACTGCAAACAGTATGTATGGATGTCTTGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTGGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTGCAGAATAATCTGAACCTAGAGGTAATTTATGGTGATACCGATTCAATAATGATTCATAGTGGACTTGATGATATTGGTCAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTCAACAGAAAGTATAAATGTTTAGAAATTGATCTTGATGGCTTGTATAAGAGAATGCTGCTTCTGAAGAAAAAGAAATATGCAGCTGTAAAGTTGCAGTTCAAAGATGGAACGCCATATGAGGTTATTGAGCGCAAGGGTCTTGATATGGTTCGTCGTGATTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAGTCAAATATTGTCTGGAGGGTCATGTGAGGATGTCACTGAATCGATACACGATTCTCTTGTGAAGATACAAGAGGATATGAGGAAAGGGCAAGTTGTACTTGAGAAATATATCATCACGAAGACATTGACCAAGCCACCTGAAGCCTATCCTGATGCCAAAAACCAACCACATGTTCAAGTTGCACTAAGGTTAAAACAAATGGGCTATTCAACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTGCTGTGAGCAGGGATCTACTTCTGGTGGTTCTGTAGGCATTGCTCAGCGGGCTAGACATCCTGATGAATTAAAAAAGGAAGATGGAAAATGGATGATCGACATCGATTACTACCTGTCACAGCAGATTCACCCTGTGGTTTCTCGTCTATGTGCCTCAATCCAGGGCACTAGCCCAGAACGCTTGGCTGACTGTCTGGGGCTTGATTCATCGAAGTTTCAAAACAAATCAAGTGAAGTTTCCCGAAGCGATGTCTCCTCTTCCCTTTTGTGTTCCATAAACGATGAGGAAAGGTATCAGGGCTGTATACCACTGACATTAACTTGCCCCAGCTGCTCTGGTACTTTTGAGTGTCCTGCTATCTTCAGTTCTATATACAAATCGGCAGATGGAAAGCAAGAAAAGGCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGCGTTGTCCGAAATGTCCCGACGAAGCTAGTGCGGGTAGAATGACTCCTGGAATGATTGCTAACCAGGTAAAAAGGCAAGCAGAGAGGTTCATTTCGATGTATTATAATGGCTTACTGATGTGTGAGGATGAAACCTGCAAATATACCACACGTGCTGTCAATCTTCGAGTTATGGGCGACTCTGAGAAAGGAACCATCTGCCCAAACTATACCCACTGCAATGGGCGTCTAATAAGAAAGTACACAGAAGTGGATTTGTACAAGCAGCTTGCATATTTTAGTCACACTTTGGATACCATACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTAACTTTAGAGAAAGAAATGGCTAAAATTCGGCCAATAGTAGAGTTAGCTGCATCAACAATTCAAAGTCTTCGAGATCGCAGCGCATATGGTTGGGTGCAGTTGCAGGATTTTGTAGTTACAGTTTGA 4647 42.93 MADEQPSAANRRRSRGSEATARLQALERLKAIRTGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGICFSDESDGEPEKPKKRKSEKKEAQPKKPSSTSLSAAAAMMGKQKLSSMFTSSIFRKTGKDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGQIGATSISKTFAPVSAMKCEGIIAQSLNLTGGSELVKGTVNGNSGMTKDFTNSDLESVQADIEIQGNGETKKFDSKDNLDSEMNLVSVGQSHNPSIKDDVIEDNMPTVVETKSEALVKKEPVCTLNAMISDVKDPALSATAGWQAVRSEGSGNADSAADTSEDKSHFDIDADGSLPFYMVDAHEELFGANMGTVYLFGKVKAGDTYHSCCVVVKNVQRCVYAIPSASFLHSDEMLKLQNDAEQSQLSPTDLRTKLQEVTAGLKNEIAQQLLDLNVPTFSMTPVKRKYAFERQDIPTGENYVLKINYPFKHPPLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPGSQRVSWCKFEVIIDSPKDVQISTSSSKTLEIPPMIVTAINIKTIINEKQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESTDRNSKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSCMWSKIGRLKRSVMPKLGKGGGIFGSGASPGVMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHDIPRMYHASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKFSTYVKEKKMVKKRTNHGSEEKNLDNVDLDDANIEAPNTESGKGKKGSSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGVIPRLPSSKVTGVLPELLKNLVQRRRMVKSWMKNASGIKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDIGQVKAIAGKVIQEVNRKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVTESIHDSLVKIQEDMRKGQVVLEKYIITKTLTKPPEAYPDAKNQPHVQVALRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSVGIAQRARHPDELKKEDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKSSEVSRSDVSSSLLCSINDEERYQGCIPLTLTCPSCSGTFECPAIFSSIYKSADGKQEKAVDEPTSKFWNNLRCPKCPDEASAGRMTPGMIANQVKRQAERFISMYYNGLLMCEDETCKYTTRAVNLRVMGDSEKGTICPNYTHCNGRLIRKYTEVDLYKQLAYFSHTLDTIRCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSLRDRSAYGWVQLQDFVVTV 1548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2939138 2951209 - CmoCh02G005250.1 Cmo02g00525 376122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00525 1548 MobiDBLite consensus disorder prediction 882 899 - -
Cmo02g00525 1548 MobiDBLite consensus disorder prediction 882 919 - -
Cmo02g00525 1548 Gene3D - 367 566 - -
Cmo02g00525 1548 Gene3D Helix hairpin bin 978 1029 - -
Cmo02g00525 1548 Coils Coil 1094 1114 - -
Cmo02g00525 1548 MobiDBLite consensus disorder prediction 1 18 - -
Cmo02g00525 1548 TIGRFAM pol2: DNA polymerase (pol2) 51 1298 - -
Cmo02g00525 1548 Pfam DNA polymerase family B, exonuclease domain 395 774 IPR006133 -
Cmo02g00525 1548 PANTHER DNA POLYMERASE 349 1545 - -
Cmo02g00525 1548 PRINTS DNA-directed DNA-polymerase family B signature 937 950 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cmo02g00525 1548 PRINTS DNA-directed DNA-polymerase family B signature 1013 1025 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cmo02g00525 1548 PRINTS DNA-directed DNA-polymerase family B signature 1066 1074 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cmo02g00525 1548 MobiDBLite consensus disorder prediction 76 135 - -
Cmo02g00525 1548 MobiDBLite consensus disorder prediction 1 22 - -
Cmo02g00525 1548 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Cmo02g00525 1548 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 349 1545 - -
Cmo02g00525 1548 Gene3D DNA Polymerase alpha, zinc finger 1339 1532 IPR038256 -
Cmo02g00525 1548 SUPERFAMILY Ribonuclease H-like 362 868 IPR012337 -
Cmo02g00525 1548 MobiDBLite consensus disorder prediction 88 124 - -
Cmo02g00525 1548 CDD DNA_polB_alpha_exo 580 831 - -
Cmo02g00525 1548 Gene3D Palm domain of DNA polymerase 919 1124 IPR023211 -
Cmo02g00525 1548 Gene3D - 580 896 IPR036397 GO:0003676
Cmo02g00525 1548 CDD POLBc_alpha 913 1316 IPR045846 GO:0003887|GO:1902975
Cmo02g00525 1548 SUPERFAMILY DNA/RNA polymerases 864 1316 IPR043502 -
Cmo02g00525 1548 Gene3D - 1144 1330 IPR042087 -
Cmo02g00525 1548 Pfam DNA Polymerase alpha zinc finger 1339 1544 IPR015088 GO:0003887|GO:0006260
Cmo02g00525 1548 Pfam DNA polymerase family B 840 1300 IPR006134 GO:0000166|GO:0003677
Cmo02g00525 1548 ProSitePatterns DNA polymerase family B signature. 1068 1076 IPR017964 GO:0000166|GO:0003676
Cmo02g00525 1548 Gene3D - 407 533 - -
Cmo02g00525 1548 SMART polmehr3 580 1080 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00525 Cmo-Chr2:2939138 Cmo07g00846 Cmo-Chr7:3989511 2.24E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00525 K02320 - csv:101211201 2657.48