Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00526 ATGGAGTGGGTTCGAGGAGATGAACTGGGTCGTGGAAATTTTGGGACGATCAGTTTAGCAATTCTCACAAAGGGCTTCGATCAGTTTCCGCCATTAATGGCGGTGAAATCCTCTGTTTCTGTTTCGGTGTCCTCTGTTTCGCTGAAGAACGAGAAGAAGGTTTTGGATCGAATTGGGAATTGCCCACAAATCGTTACTTGTTTTGGCGATGGATTTAGTGTTGAAAGAGATGGGGAGAAGTATTATAATCTGTTCTTGGAGTATGCCAATGGCGGAAGCCTTGCGGATACTGTGAAACTCCACGGCGGTGGGTTGCTGGAATTTGATGTTCGACGGTATACGAGGGCGATTCTTTGTGGGCTTCGGCATGTTCATGGTAATGGGTTTGTTCATTGCGATTTGAAGCTTTCCAATGTGTTGGTTTTTGGGAATGGTGAGGTTAAGATCGCTGATTTTGGGCTTGCGAAAGAGGCCGCGGCGGCGGAAACAGAGGAAACAGAGGAGAAATTTGAGTGGAGAGGGACGCCGATGTATATGTCGCCAGAGACGGTAAACGGCGGGAAGTATGCGCCGCCGTGTGATGTTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGGAGGAAAGCCGGCGTGGAGGGTTAAGCCAGAAACGGATATATTTGGGCTGATGATGATGATCGGAGTCGGAGACGAAGTGCCGGAGCTGCCAGAGAATTTATCGGAAGAGGGGAAAGATTTTCTCCGTCGGTGTTTCGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTCTGAATCACCCATTTGTGGCCGGTGCCGGTGAGACTGTTACATTAAAAGAATCGAACTTAACAACCGAGTCGCCGACGGGTCCTTTCGACTTCCCGGAATTCATTTGTTCTTCAAATCAACGTTGTGAGGAGATGAGTTTGTGTTGTTCTAGTTCGACGGCGGAGATGATGAATAGACTCCGACGGGTAGTGACGGAGAAGCCATTGGATTGGTCTTTTACAGAAAGTTGGGTGACAGTGAGGTGA 1041 49.47 MEWVRGDELGRGNFGTISLAILTKGFDQFPPLMAVKSSVSVSVSSVSLKNEKKVLDRIGNCPQIVTCFGDGFSVERDGEKYYNLFLEYANGGSLADTVKLHGGGLLEFDVRRYTRAILCGLRHVHGNGFVHCDLKLSNVLVFGNGEVKIADFGLAKEAAAAETEETEEKFEWRGTPMYMSPETVNGGKYAPPCDVWALGCAVVEMVGGKPAWRVKPETDIFGLMMMIGVGDEVPELPENLSEEGKDFLRRCFVKDPRKRWTAEMLLNHPFVAGAGETVTLKESNLTTESPTGPFDFPEFICSSNQRCEEMSLCCSSSTAEMMNRLRRVVTEKPLDWSFTESWVTVR 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2952045 2953085 - CmoCh02G005260.1 Cmo02g00526 376123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00526 346 Pfam Protein kinase domain 5 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00526 346 SMART serkin_6 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00526 346 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Cmo02g00526 346 ProSiteProfiles Protein kinase domain profile. 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00526 346 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 322 - -
Cmo02g00526 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cmo02g00526 346 CDD STKc_MAPKKK 2 271 - -
Cmo02g00526 346 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 322 - -
Cmo02g00526 346 SUPERFAMILY Protein kinase-like (PK-like) 3 313 IPR011009 -
Cmo02g00526 346 Gene3D Transferase(Phosphotransferase) domain 1 96 295 - -
Cmo02g00526 346 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00526 Cmo-Chr2:2952045 Cmo20g01005 Cmo-Chr20:6127972 0 dispersed
Cmo02g00526 Cmo-Chr2:2952045 Cmo03g00571 Cmo-Chr3:5572843 6.02E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74097 PF00069 Pkinase 9.20E-52 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00526 - - csv:101214756 564.688