Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00531 ATGGATGGCAGTATTAATGATCTTAAGGTGCCTCTAAATCCACTGGACCTCGATAATGAAGACAGAGTGGCAGAATTTCTAGAAGCCGGAGGTTTCGCGGCCGAGGAGTTCTCAGAACAAGTCATTGCAATATGTCGTCTAAGAATCAGAAGAATGGTCTGCACGGCCAAAGCCCGATCTCTTCAACATGCCGTACGCATGGTCAACGGCGTCAAACGAGTACTCATCGGTCCCGGAATAGATGAAGCCAAAATCTTCTTCGATCCAAATTTGACCAACGAAGCCGAAATCCTCGCTGCCACCGATGATTCCGGCTTCGAATCCGAGCTCATCTCCGCCGCAGACGAGGCCTACAAAGTTCATATAAAACTCGATCAAGTTGGCCCTGCGGACATGACCGCCATAAGAACCTCTCTCGAGCAAGCTTCTGGAGTGAACTCTGTTGAAATGGATGGGCTAGGGCAGATGGTTTCCATCCACTATGACCCTGACCGGACTGGTCCGAGATCTCTTTTGCAGTGCCTCAAGAGCTACGGAGCGAGTTTGTATGTGCCACCGAAGAGAAGAGATGTGGAGCAGCATCAAGAAGCTTGTACTTATAGGAACTTGTTCTTGTTCAGCTGCTTGTTTTCTGTTCCTGTGGTGGCTTTTGCAATGGTGCTTCCTATGCTTCCTCCTTATGGGGAGTGGCTGAATTTTAGGGTTTACAATATGCTTACTGTTGGAATGGTTCTTAAATGGATCTTCTGCACACCAGTTCAGTTCTTTGCTGGCCGGAGATTTTATGTAGGATCATACCGTGCATTACAACAAAAATCAGCAAATATGGATGTTTTGGTTGCTGTAGGCACCAATGCAGCATACTTTTACTCAGTATACATAGTATTTAAAGCATCCACTTCCAACTCTTTTAGAGGGAAAGATTTCTTTGAGTTTAGCTCCATGTTGATCTCCTTCATTCAACTTGGAAAGTATTTGGAGGTCATGGCCAAAGGGAAATCATCAGATGCTTTAGCAAAGCTTGCTCATCTTGCTCCTCATGCCGCTTGTTTGATGACCTTTGATGATCATGGAAATTTGCTATCAGAGATGGAGATTGATACCCAGTTGATACAGAGGAATGATATCATTAAGATTGTTGCTGGGGCAAAAGTTCCTGTTGATGGAATTGTTATTAGTGGTGAAAGCAATGTGAATGAGAGTACAATTACTGGAGAAGCAAGATCCATTGCGAAAACACCCGGTGATAAGGTTATTGGCGGGACTGTCAATGAAAATGGATGCTTATTTATTAAGACCACACATGTTGGATCTGATACTACACTTTCTCGAATTGTACAACTAGTGGAATCAGCTCAGCTATCACGAGCACCGGCTCAAAAATTAGCAGACCGGATATCAAAGTTTTTTGTTCCTGTTGTTGTTGTGGCAGCATTTGTGACATGGCTTGGTTGGTTAATTTGTGGGGAAGCTGGTTTGTACCCTAAACATTTTATTCCAAAGGGCATGGATGAGTTTGAACTTGCACTGCAATTTGGCATTTCAGTGCTGGTGATCGCGTGCCCATGTGCCCTTGGTTTAGCAACACCAACTGCTATCATGGTTGCATCAGGGAAGGGTGCTTCTCTTGGTGTCCTCATTAAGGGAGCAAGTGCACTTCAAAATGCATACAAGGTGAAAATGGTAGTTTTCGACAAGACTGGAACTCTAACGGTTGGCAGGCCAGAGGTTGTTAGTGTTGTGCTTTTTTCTACATTTCCAATGCAGGAGCTCTGCGATGTAGCAATAGCAATTGAGTCAAACAGCAAACACCCTTTAGCAAAATGTGTAGTGGATCATGCAATGAAAATGAGAAAAAAGTTTGGGGCCCGAACCGAATGTCGCAAACGCATACAGAACTTTGAGGTTTTCCCGGGAGGAGGGGTTGGAGGAAAAATTGATAGAAAACCAGTTTTAGTAGGAAACCGAAGGCTCATGCGAGCTCACAACATTGTTGTTGGTCCTCAAGTTGATCGTTATGTTATAGAAAATGAGCGGCTGGCTCAAACATGTATATTAGTGGCTATAAATGGCAGGGTAGCTGGAGGTTTTGGTGTTATAGATGCGCCAAAGTCTGGGACTAAAGCTGTTATATCGTATCTTCGCTCAATCGGCATCTCAAGCATAATGGTCACTGGCGATAACTGGGCCACAGCATTTGCCGTTGCAAGAGGGGTTGGGATCAATGAGGTCTTTGCAGAGATGGATCCAATTGGAAAAGCTAACAAGATCAAATCCTTAAAGACAACAGGGAATATTGTGGCAATGGTGGGAGATGGAGTAAACGACTCGCATGCCTTAGCTGCAGCTGATGTTGGCATTGCCATTGGTGCTGGAACAAATATTGCTATAGAAGCAGCTGATATAGTTCTCATGCGAAGCAATTTAGAAGATGTAGTTACAGCCATAGATCTCTCAAGACAAACTGTTTATCGTATATGGCTTAACTACATCTGGGCACTTGGCTATAATATTATAGGTATGCCTATTGCTGCCGGAATCTTATATCCCTTTACTGGAATCCGATTGCCGCCGTGGCTCGCCGGTGCCTGCATGGCTGCTTCCTCCCTTAGCGTCGTATGTTCTTCTCTCTTATTGAAATGCTATAGGAGACCCTTGAATTTTCAATCCACTTGA 2676 44.36 MDGSINDLKVPLNPLDLDNEDRVAEFLEAGGFAAEEFSEQVIAICRLRIRRMVCTAKARSLQHAVRMVNGVKRVLIGPGIDEAKIFFDPNLTNEAEILAATDDSGFESELISAADEAYKVHIKLDQVGPADMTAIRTSLEQASGVNSVEMDGLGQMVSIHYDPDRTGPRSLLQCLKSYGASLYVPPKRRDVEQHQEACTYRNLFLFSCLFSVPVVAFAMVLPMLPPYGEWLNFRVYNMLTVGMVLKWIFCTPVQFFAGRRFYVGSYRALQQKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFRGKDFFEFSSMLISFIQLGKYLEVMAKGKSSDALAKLAHLAPHAACLMTFDDHGNLLSEMEIDTQLIQRNDIIKIVAGAKVPVDGIVISGESNVNESTITGEARSIAKTPGDKVIGGTVNENGCLFIKTTHVGSDTTLSRIVQLVESAQLSRAPAQKLADRISKFFVPVVVVAAFVTWLGWLICGEAGLYPKHFIPKGMDEFELALQFGISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKMVVFDKTGTLTVGRPEVVSVVLFSTFPMQELCDVAIAIESNSKHPLAKCVVDHAMKMRKKFGARTECRKRIQNFEVFPGGGVGGKIDRKPVLVGNRRLMRAHNIVVGPQVDRYVIENERLAQTCILVAINGRVAGGFGVIDAPKSGTKAVISYLRSIGISSIMVTGDNWATAFAVARGVGINEVFAEMDPIGKANKIKSLKTTGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFTGIRLPPWLAGACMAASSLSVVCSSLLLKCYRRPLNFQST 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3007937 3013832 - CmoCh02G005310.1 Cmo02g00531 376128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00531 891 CDD P-type_ATPase_Cu-like 204 866 - -
Cmo02g00531 891 SFLD p-type atpase 545 822 IPR044492 -
Cmo02g00531 891 SUPERFAMILY HMA, heavy metal-associated domain 44 113 IPR036163 GO:0046872
Cmo02g00531 891 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 19 890 - -
Cmo02g00531 891 PRINTS Copper-transporting ATPase 1 signature 44 69 - -
Cmo02g00531 891 PRINTS Copper-transporting ATPase 1 signature 259 284 - -
Cmo02g00531 891 PRINTS Copper-transporting ATPase 1 signature 239 259 - -
Cmo02g00531 891 PRINTS Copper-transporting ATPase 1 signature 70 93 - -
Cmo02g00531 891 PRINTS Copper-transporting ATPase 1 signature 204 225 - -
Cmo02g00531 891 Pfam E1-E2 ATPase 362 541 - -
Cmo02g00531 891 PANTHER COPPER-TRANSPORTING ATPASE HMA4 19 890 - -
Cmo02g00531 891 Gene3D - 650 701 IPR023299 GO:0000166
Cmo02g00531 891 Gene3D - 570 649 IPR023299 GO:0000166
Cmo02g00531 891 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 276 879 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cmo02g00531 891 SUPERFAMILY Calcium ATPase, transduction domain A 363 449 IPR008250 -
Cmo02g00531 891 PRINTS P-type cation-transporting ATPase superfamily signature 399 413 - -
Cmo02g00531 891 PRINTS P-type cation-transporting ATPase superfamily signature 717 727 - -
Cmo02g00531 891 PRINTS P-type cation-transporting ATPase superfamily signature 563 577 - -
Cmo02g00531 891 PRINTS P-type cation-transporting ATPase superfamily signature 770 789 - -
Cmo02g00531 891 PRINTS P-type cation-transporting ATPase superfamily signature 695 706 - -
Cmo02g00531 891 PRINTS P-type cation-transporting ATPase superfamily signature 793 805 - -
Cmo02g00531 891 Gene3D - 45 106 - -
Cmo02g00531 891 SUPERFAMILY HAD-like 561 876 IPR036412 -
Cmo02g00531 891 Gene3D - 331 453 - -
Cmo02g00531 891 ProSiteProfiles Heavy-metal-associated domain profile. 44 110 IPR006121 GO:0046872
Cmo02g00531 891 SUPERFAMILY Calcium ATPase, transmembrane domain M 320 557 IPR023298 -
Cmo02g00531 891 ProSitePatterns E1-E2 ATPases phosphorylation site. 565 571 IPR018303 -
Cmo02g00531 891 CDD HMA 47 109 IPR006121 GO:0046872
Cmo02g00531 891 SFLD Haloacid Dehalogenase 545 822 - -
Cmo02g00531 891 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 316 600 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo02g00531 891 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 678 847 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo02g00531 891 Gene3D - 530 826 IPR023214 -
Cmo02g00531 891 SUPERFAMILY HMA, heavy metal-associated domain 130 184 IPR036163 GO:0046872
Cmo02g00531 891 Pfam haloacid dehalogenase-like hydrolase 559 784 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00531 Cmo-Chr2:3007937 Cmo02g01497 Cmo-Chr2:8752694 0 dispersed
Cmo02g00531 Cmo-Chr2:3007937 Cmo03g00234 Cmo-Chr3:3602692 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00531 K17686 - csv:101214276 1405.96