Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00534 ATGTGGGATCTCAATGATTCGCCCGATCATGGCGGAACTGATGAATTTGAGGGCCTTTCGTCGATTGACGGCGATGATGACAGAGCGAAATGGGTTGGATCAATTAATTCCAACTCGAGCTCTTCAGCAGTGGTTTTGGAGGATGGATCCGACGCCGATGAAGCCGGCGTCGACGAGCGCGAACACCCAGTCTCCCGGGAAAGCTTCTCGGCAACCCACCCGCCGGCAACTCGTCAGTTCTTCCCCCTGGAGAATTCCAACGTGGATGCTTCATCCGCCAGTGGCGGTGGCGGTGGTTCGACTGCGTTTCCACGAGCTCGGTGGTTCGGCGTGAAGTTCTGCCAGACAGAGCCTGTCTCCGCCGTGAGACCAATGGCGGTTCTGCAACCAATAAAGAAAAGCCGACGAGGGCCAAGGTCTCGAAGCTCTCAATATCGCGGCGTCACGTTTTACCGGCGAACCGGCCGGTGGGAATCTCATATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGACACAGCTCATTCAGCTGCTCGAGCCTATGACAGGGCAGCTATAAAGTTTCGAGGAACAGATGCAGACATAAACTTCAGTATTGAAGACTACGAGGAGGATTTGAAGCAGATGGGGAAGTTAACAAAGGAAGAATTTGTTCATGTTCTTCGTAGACAAAGTACAGGTTATCCAAGGGGAAGCTCAAAATTTAGAGGCGTAACATTGCACAAATGTGGAAGATGGGAGGCTCGTATGGGCCAATTCTTAGGCAAAAAGTACGTTTATCTGGGGTTGTTCGATTCCGAAATCGAAGCTGCAAGAGCTTATGACAAAGCTGCTATCAAATGTAATGGCAAGGAAGCTGTCACAAACTTTGATCCCACCATATATGAGAATGAGCTTAGGACAGATGCATCATCAGGCTATGCGTTGGAACAAAATCTTGATTTGAGGTTAGGAAATTCAAGCTCAAAACAACACACAAATGATATGCAAAATAAGGAATCAAATGTAATTGAGAAGATGCAGTTTGGTAGCGAAACGATTGTTCGATGTCCACGCTCCATCGACACAACGATACATGAGCAGTCTCCATATATCAATGAATCAAACTCGGAGATCGATGTGTCGCTGAGTTTGAGTGAAAGGCAGCAATGGCAGCAAGGTTGTGGTGGCTATGAACAAATTGGAACAGCGGCAGCAGCATCATCAGGATTCCCACAAATTCAGGTTTCAAGTTCACCAAATTGGGTGAAGAAAAAATAA 1266 47.79 MWDLNDSPDHGGTDEFEGLSSIDGDDDRAKWVGSINSNSSSSAVVLEDGSDADEAGVDEREHPVSRESFSATHPPATRQFFPLENSNVDASSASGGGGGSTAFPRARWFGVKFCQTEPVSAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGTDADINFSIEDYEEDLKQMGKLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPTIYENELRTDASSGYALEQNLDLRLGNSSSKQHTNDMQNKESNVIEKMQFGSETIVRCPRSIDTTIHEQSPYINESNSEIDVSLSLSERQQWQQGCGGYEQIGTAAAASSGFPQIQVSSSPNWVKKK 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3034021 3036037 - CmoCh02G005340.1 Cmo02g00534 376131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00534 421 SUPERFAMILY DNA-binding domain 143 201 IPR016177 GO:0003677
Cmo02g00534 421 MobiDBLite consensus disorder prediction 1 80 - -
Cmo02g00534 421 CDD AP2 235 295 IPR001471 GO:0003700|GO:0006355
Cmo02g00534 421 MobiDBLite consensus disorder prediction 32 46 - -
Cmo02g00534 421 CDD AP2 144 199 IPR001471 GO:0003700|GO:0006355
Cmo02g00534 421 SUPERFAMILY DNA-binding domain 235 294 IPR016177 GO:0003677
Cmo02g00534 421 ProSiteProfiles AP2/ERF domain profile. 144 200 IPR001471 GO:0003700|GO:0006355
Cmo02g00534 421 Gene3D AP2/ERF domain 235 294 IPR036955 GO:0003700|GO:0006355
Cmo02g00534 421 Gene3D AP2/ERF domain 143 202 IPR036955 GO:0003700|GO:0006355
Cmo02g00534 421 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 347 - -
Cmo02g00534 421 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700|GO:0006355
Cmo02g00534 421 PRINTS Ethylene responsive element binding protein signature 275 295 IPR001471 GO:0003700|GO:0006355
Cmo02g00534 421 SMART rav1_2 144 206 IPR001471 GO:0003700|GO:0006355
Cmo02g00534 421 SMART rav1_2 236 299 IPR001471 GO:0003700|GO:0006355
Cmo02g00534 421 ProSiteProfiles AP2/ERF domain profile. 236 293 IPR001471 GO:0003700|GO:0006355
Cmo02g00534 421 Pfam AP2 domain 235 284 IPR001471 GO:0003700|GO:0006355
Cmo02g00534 421 Pfam AP2 domain 144 192 IPR001471 GO:0003700|GO:0006355
Cmo02g00534 421 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00534 Cmo-Chr2:3034021 Cmo07g00709 Cmo-Chr7:3197835 8.76E-114 dispersed
Cmo04g00269 Cmo-Chr4:1358706 Cmo02g00534 Cmo-Chr2:3034021 4.47E-45 dispersed
Cmo02g00534 Cmo-Chr2:3034021 Cmo03g00985 Cmo-Chr3:7417465 6.07E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9225 PF00847 AP2 1.60E-09 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00534 K09284 - csv:101208665 618.616