Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00534 | ATGTGGGATCTCAATGATTCGCCCGATCATGGCGGAACTGATGAATTTGAGGGCCTTTCGTCGATTGACGGCGATGATGACAGAGCGAAATGGGTTGGATCAATTAATTCCAACTCGAGCTCTTCAGCAGTGGTTTTGGAGGATGGATCCGACGCCGATGAAGCCGGCGTCGACGAGCGCGAACACCCAGTCTCCCGGGAAAGCTTCTCGGCAACCCACCCGCCGGCAACTCGTCAGTTCTTCCCCCTGGAGAATTCCAACGTGGATGCTTCATCCGCCAGTGGCGGTGGCGGTGGTTCGACTGCGTTTCCACGAGCTCGGTGGTTCGGCGTGAAGTTCTGCCAGACAGAGCCTGTCTCCGCCGTGAGACCAATGGCGGTTCTGCAACCAATAAAGAAAAGCCGACGAGGGCCAAGGTCTCGAAGCTCTCAATATCGCGGCGTCACGTTTTACCGGCGAACCGGCCGGTGGGAATCTCATATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGACACAGCTCATTCAGCTGCTCGAGCCTATGACAGGGCAGCTATAAAGTTTCGAGGAACAGATGCAGACATAAACTTCAGTATTGAAGACTACGAGGAGGATTTGAAGCAGATGGGGAAGTTAACAAAGGAAGAATTTGTTCATGTTCTTCGTAGACAAAGTACAGGTTATCCAAGGGGAAGCTCAAAATTTAGAGGCGTAACATTGCACAAATGTGGAAGATGGGAGGCTCGTATGGGCCAATTCTTAGGCAAAAAGTACGTTTATCTGGGGTTGTTCGATTCCGAAATCGAAGCTGCAAGAGCTTATGACAAAGCTGCTATCAAATGTAATGGCAAGGAAGCTGTCACAAACTTTGATCCCACCATATATGAGAATGAGCTTAGGACAGATGCATCATCAGGCTATGCGTTGGAACAAAATCTTGATTTGAGGTTAGGAAATTCAAGCTCAAAACAACACACAAATGATATGCAAAATAAGGAATCAAATGTAATTGAGAAGATGCAGTTTGGTAGCGAAACGATTGTTCGATGTCCACGCTCCATCGACACAACGATACATGAGCAGTCTCCATATATCAATGAATCAAACTCGGAGATCGATGTGTCGCTGAGTTTGAGTGAAAGGCAGCAATGGCAGCAAGGTTGTGGTGGCTATGAACAAATTGGAACAGCGGCAGCAGCATCATCAGGATTCCCACAAATTCAGGTTTCAAGTTCACCAAATTGGGTGAAGAAAAAATAA | 1266 | 47.79 | MWDLNDSPDHGGTDEFEGLSSIDGDDDRAKWVGSINSNSSSSAVVLEDGSDADEAGVDEREHPVSRESFSATHPPATRQFFPLENSNVDASSASGGGGGSTAFPRARWFGVKFCQTEPVSAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGTDADINFSIEDYEEDLKQMGKLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPTIYENELRTDASSGYALEQNLDLRLGNSSSKQHTNDMQNKESNVIEKMQFGSETIVRCPRSIDTTIHEQSPYINESNSEIDVSLSLSERQQWQQGCGGYEQIGTAAAASSGFPQIQVSSSPNWVKKK | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3034021 | 3036037 | - | CmoCh02G005340.1 | Cmo02g00534 | 376131 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00534 | 421 | SUPERFAMILY | DNA-binding domain | 143 | 201 | IPR016177 | GO:0003677 | |
Cmo02g00534 | 421 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
Cmo02g00534 | 421 | CDD | AP2 | 235 | 295 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | MobiDBLite | consensus disorder prediction | 32 | 46 | - | - | |
Cmo02g00534 | 421 | CDD | AP2 | 144 | 199 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | SUPERFAMILY | DNA-binding domain | 235 | 294 | IPR016177 | GO:0003677 | |
Cmo02g00534 | 421 | ProSiteProfiles | AP2/ERF domain profile. | 144 | 200 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | Gene3D | AP2/ERF domain | 235 | 294 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | Gene3D | AP2/ERF domain | 143 | 202 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 | 1 | 347 | - | - | |
Cmo02g00534 | 421 | PRINTS | Ethylene responsive element binding protein signature | 237 | 248 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | PRINTS | Ethylene responsive element binding protein signature | 275 | 295 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | SMART | rav1_2 | 144 | 206 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | SMART | rav1_2 | 236 | 299 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | ProSiteProfiles | AP2/ERF domain profile. | 236 | 293 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | Pfam | AP2 domain | 235 | 284 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | Pfam | AP2 domain | 144 | 192 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00534 | 421 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 347 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00534 | Cmo-Chr2:3034021 | Cmo07g00709 | Cmo-Chr7:3197835 | 8.76E-114 | dispersed | |
Cmo04g00269 | Cmo-Chr4:1358706 | Cmo02g00534 | Cmo-Chr2:3034021 | 4.47E-45 | dispersed | |
Cmo02g00534 | Cmo-Chr2:3034021 | Cmo03g00985 | Cmo-Chr3:7417465 | 6.07E-130 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9225 | PF00847 | AP2 | 1.60E-09 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00534 | K09284 | - | csv:101208665 | 618.616 |