Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00543 ATGAGAGCTCATCGTTTGAGCTTCTTCATTTTCTCTCTCTCATTATTCACTTCATTCATCGGAGCCTTCCCGCTTCTTCGCGATTCTGCCATTTCAACTAGGAGGATTCTGCATCAGCCTCTCTTTCCGATAGGCTCTGAGCCGCCGCCGGATATTGAGTTAACCCCGCCGCCGCCTCCTGACTCTCCCTCCGACGTTCCGCCGTTTTTCCATGACCCGCCGACCACTCAAGATCAGACTCAACCGCCTCCTCCGTCTACCAATGGAACTATGCCTATCCCTGCTGCTACGGCGCAACAATCCAAGCCGACGAAGACCGTTGCGATTGCAATTTCGGTTGGGATTGTGACTTTGGGGATGCTCTCTGCTCTGGCGTTTTTTCTGTATCGTCACCGGGCGAAGCATCCGGGGGAGTCGCAGAAGCTTGTTGGAGGGAGTAATCCGGAGAGATTTCCGGAGGATTCGCGTGCGCCGCCGTCGAGTTTTTTCTATATTGGGACTGTGGAGCCGAGCCAGAGCTCTGTTGTTGAGCAGAATGGTGCTAATGGTGCTAATAGTTCGCCTTATCGCAAGCTGAATTCGATTAAGATGTCGGATCGGTACCGGCCGAGTCCGGAATTGCAGCCGCTGCCGCCTCTGCCGAAGCCGCCTATGGCTATGTCGCCTCCCGCTCTGTCGTCTTCGGATGATGAAAGCCAGAATACGGCATTCCATACTCCACAATGCTCGTCAATTGTTAGTCATGATGATGGCTATTTCTCACCGGCTTCTCGTCGAAGTAATTCTGTTAAGAGCTGTTCTACGGCAAGTTTTAAGAATGACCATATGAATTCCAATGCTCCTCCTATTCCTCATTCTAAAAGAACCTCTCCGAAATCTAGATTCTCGGTTTCTTCGACCAAGCGCAATACGTCTCAGCCTCAGCCACCACCGCCGCCGCCTCCACCGCGTCCGCTTGATGACCTTCGTGAAATTCCGAATTCGAAAGAAACAATGCCTTTCTCTTCCACGAGACCTAAATTTTCGAAGCCTCCGCCTCCACCAAATTTGGCGCTTCTTCAAACAATTAGCAATTCCGCCACATATCCTCAAATTCAGAAAACTGCTGCACCTCCACCTCCACCTCCGCCTCCGCCTCCGCCTCCACCGCCACCTCCACGACCACCGCCGCATCCGGTTTCGTATTCAACGCCACAAAAACTAGGGTTATCGGAAACCAGAATGGGTCCAGTCACTCCTCCAGATTCCTCCAAGTCACAATCCTATTCAACAGCGAGAACAAACTCATCGTCCAAATCCACACCGACATCTGCACCAGCAAATTCCGCTAACGAAGATGTTGTCGAAAGGATTAATTCGATGGAAAGGCTTGAATACGAAGATACAGAAGGTTCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGGGCAACCTCAGACCGAGCTACAGTATGGGATCAACTCAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAAACACTTTTTGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAGGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAATAGGGTATTGGATCCCAAAAAGTCGCAGAACATTGCAATACTCCTAAGAGCTCTTAATGTCACGCGTGATGAAGTGATCGAAGCTCTTCAAGATGGTAACCCGGAAGGGTTTGGTACCGAGCTTTTAGAAACGCTAGTGAAGATGGCTCCAACCAAAGAAGAAGAGATAAAACTGAGAGAGTACTGTGGTGATGGTTCAAAATTAGGGACTGCAGAAAGATTTCTGAAGGCAGTGCTTGAAGTCCCATTTGCCTTTAGAAGAGTTGAGGCCATGCTGTACAGAGCCAATTTTGATTCAGAAGTGAAGTATCTAAGGAAGTCATTTCAAACGCTTGAGGTTGCAAGTGAGGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTTAAGACGGGAAATAGGATGAATGTCGGTACAAATCGTGGTGATGCTAAATCCTTTAAGCTTGAGACCCTCTTAAAATTAGTAGATATAAAGGGAACGGATGGAAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATTATCAGATCAGAAGGTGGTGCTGATTCAACTAGTGACAACCTTCAACCCCGTTCGCAATCGAAAATCGAGGATGAATTTAGAAAGCAGGGCTTGCAGGTTGTGGCTGGACTGAGCAGAGACCTTAGCAATGTGAAAAAAGCAGCTGGTATGGACTCGGACGTCTTGAGCAGCTATGTCACAAAGCTCGAAATGGGGCTTGAAAAAGTAAGGATGGTTTTGCAATTCGAAAAGCCAGGAATGCATGGAAAGTTCTTCGACTCGATGAAAACATTCTTGAAGGAGGCAGAAGAAGAAATAGTTAGGATCAAGGACGACGAAAGGAAAGCTTTATCTCTGGTGAAAGCGGTCACAGAGTATTTCCATGGTGACGCTGCCAAGGAGGAAGCTCATCCATTCCGAATCTTCATGATCGTTCGGGATTTCCTAACCATACTAGATCAAGTATGCAAAGAAGTTGGGAGAATGCAGGATGGGGTAATGGTGGGTGCTGCAAGATCCTTTCGGATATCGGCAACAGCCTCCCTCCCAGTCCTCAGCAGGTACAACATCAAACACGACCGAAGTTCCGACGAGGATAGCTCATCTCCGTAA 2718 47.83 MRAHRLSFFIFSLSLFTSFIGAFPLLRDSAISTRRILHQPLFPIGSEPPPDIELTPPPPPDSPSDVPPFFHDPPTTQDQTQPPPPSTNGTMPIPAATAQQSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNPERFPEDSRAPPSSFFYIGTVEPSQSSVVEQNGANGANSSPYRKLNSIKMSDRYRPSPELQPLPPLPKPPMAMSPPALSSSDDESQNTAFHTPQCSSIVSHDDGYFSPASRRSNSVKSCSTASFKNDHMNSNAPPIPHSKRTSPKSRFSVSSTKRNTSQPQPPPPPPPPRPLDDLREIPNSKETMPFSSTRPKFSKPPPPPNLALLQTISNSATYPQIQKTAAPPPPPPPPPPPPPPPPRPPPHPVSYSTPQKLGLSETRMGPVTPPDSSKSQSYSTARTNSSSKSTPTSAPANSANEDVVERINSMERLEYEDTEGSKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDGSKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEVASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKSFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTSDNLQPRSQSKIEDEFRKQGLQVVAGLSRDLSNVKKAAGMDSDVLSSYVTKLEMGLEKVRMVLQFEKPGMHGKFFDSMKTFLKEAEEEIVRIKDDERKALSLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNIKHDRSSDEDSSSP 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3081604 3085556 - CmoCh02G005430.1 Cmo02g00543 376140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00543 905 Coils Coil 801 821 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 200 447 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 205 221 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 305 321 - -
Cmo02g00543 905 PANTHER FORMIN-RELATED 13 905 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmo02g00543 905 PANTHER FORMIN-LIKE PROTEIN 6 13 905 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 410 447 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 225 304 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 352 366 - -
Cmo02g00543 905 SMART it6_source 459 869 IPR015425 -
Cmo02g00543 905 SUPERFAMILY Formin homology 2 domain (FH2 domain) 375 865 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 42 102 - -
Cmo02g00543 905 Pfam Formin Homology 2 Domain 462 854 IPR015425 -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 137 158 - -
Cmo02g00543 905 Gene3D Formin, FH2 domain 453 865 IPR042201 -
Cmo02g00543 905 ProSiteProfiles Formin homology-2 (FH2) domain profile. 459 880 IPR015425 -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 43 70 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 367 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01208 Cmo-Chr1:9769759 Cmo02g00543 Cmo-Chr2:3081604 3.91E-122 dispersed
Cmo02g00150 Cmo-Chr2:734161 Cmo02g00543 Cmo-Chr2:3081604 1.17E-110 dispersed
Cmo02g00543 Cmo-Chr2:3081604 Cmo04g01984 Cmo-Chr4:10269132 4.86E-173 dispersed
Cmo02g00543 Cmo-Chr2:3081604 Cmo02g01705 Cmo-Chr2:9770535 1.39E-164 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00543 - - cmo:103497354 1377.46