Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00543 ATGAGAGCTCATCGTTTGAGCTTCTTCATTTTCTCTCTCTCATTATTCACTTCATTCATCGGAGCCTTCCCGCTTCTTCGCGATTCTGCCATTTCAACTAGGAGGATTCTGCATCAGCCTCTCTTTCCGATAGGCTCTGAGCCGCCGCCGGATATTGAGTTAACCCCGCCGCCGCCTCCTGACTCTCCCTCCGACGTTCCGCCGTTTTTCCATGACCCGCCGACCACTCAAGATCAGACTCAACCGCCTCCTCCGTCTACCAATGGAACTATGCCTATCCCTGCTGCTACGGCGCAACAATCCAAGCCGACGAAGACCGTTGCGATTGCAATTTCGGTTGGGATTGTGACTTTGGGGATGCTCTCTGCTCTGGCGTTTTTTCTGTATCGTCACCGGGCGAAGCATCCGGGGGAGTCGCAGAAGCTTGTTGGAGGGAGTAATCCGGAGAGATTTCCGGAGGATTCGCGTGCGCCGCCGTCGAGTTTTTTCTATATTGGGACTGTGGAGCCGAGCCAGAGCTCTGTTGTTGAGCAGAATGGTGCTAATGGTGCTAATAGTTCGCCTTATCGCAAGCTGAATTCGATTAAGATGTCGGATCGGTACCGGCCGAGTCCGGAATTGCAGCCGCTGCCGCCTCTGCCGAAGCCGCCTATGGCTATGTCGCCTCCCGCTCTGTCGTCTTCGGATGATGAAAGCCAGAATACGGCATTCCATACTCCACAATGCTCGTCAATTGTTAGTCATGATGATGGCTATTTCTCACCGGCTTCTCGTCGAAGTAATTCTGTTAAGAGCTGTTCTACGGCAAGTTTTAAGAATGACCATATGAATTCCAATGCTCCTCCTATTCCTCATTCTAAAAGAACCTCTCCGAAATCTAGATTCTCGGTTTCTTCGACCAAGCGCAATACGTCTCAGCCTCAGCCACCACCGCCGCCGCCTCCACCGCGTCCGCTTGATGACCTTCGTGAAATTCCGAATTCGAAAGAAACAATGCCTTTCTCTTCCACGAGACCTAAATTTTCGAAGCCTCCGCCTCCACCAAATTTGGCGCTTCTTCAAACAATTAGCAATTCCGCCACATATCCTCAAATTCAGAAAACTGCTGCACCTCCACCTCCACCTCCGCCTCCGCCTCCGCCTCCACCGCCACCTCCACGACCACCGCCGCATCCGGTTTCGTATTCAACGCCACAAAAACTAGGGTTATCGGAAACCAGAATGGGTCCAGTCACTCCTCCAGATTCCTCCAAGTCACAATCCTATTCAACAGCGAGAACAAACTCATCGTCCAAATCCACACCGACATCTGCACCAGCAAATTCCGCTAACGAAGATGTTGTCGAAAGGATTAATTCGATGGAAAGGCTTGAATACGAAGATACAGAAGGTTCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGGGCAACCTCAGACCGAGCTACAGTATGGGATCAACTCAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAAACACTTTTTGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAGGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAATAGGGTATTGGATCCCAAAAAGTCGCAGAACATTGCAATACTCCTAAGAGCTCTTAATGTCACGCGTGATGAAGTGATCGAAGCTCTTCAAGATGGTAACCCGGAAGGGTTTGGTACCGAGCTTTTAGAAACGCTAGTGAAGATGGCTCCAACCAAAGAAGAAGAGATAAAACTGAGAGAGTACTGTGGTGATGGTTCAAAATTAGGGACTGCAGAAAGATTTCTGAAGGCAGTGCTTGAAGTCCCATTTGCCTTTAGAAGAGTTGAGGCCATGCTGTACAGAGCCAATTTTGATTCAGAAGTGAAGTATCTAAGGAAGTCATTTCAAACGCTTGAGGTTGCAAGTGAGGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTTAAGACGGGAAATAGGATGAATGTCGGTACAAATCGTGGTGATGCTAAATCCTTTAAGCTTGAGACCCTCTTAAAATTAGTAGATATAAAGGGAACGGATGGAAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATTATCAGATCAGAAGGTGGTGCTGATTCAACTAGTGACAACCTTCAACCCCGTTCGCAATCGAAAATCGAGGATGAATTTAGAAAGCAGGGCTTGCAGGTTGTGGCTGGACTGAGCAGAGACCTTAGCAATGTGAAAAAAGCAGCTGGTATGGACTCGGACGTCTTGAGCAGCTATGTCACAAAGCTCGAAATGGGGCTTGAAAAAGTAAGGATGGTTTTGCAATTCGAAAAGCCAGGAATGCATGGAAAGTTCTTCGACTCGATGAAAACATTCTTGAAGGAGGCAGAAGAAGAAATAGTTAGGATCAAGGACGACGAAAGGAAAGCTTTATCTCTGGTGAAAGCGGTCACAGAGTATTTCCATGGTGACGCTGCCAAGGAGGAAGCTCATCCATTCCGAATCTTCATGATCGTTCGGGATTTCCTAACCATACTAGATCAAGTATGCAAAGAAGTTGGGAGAATGCAGGATGGGGTAATGGTGGGTGCTGCAAGATCCTTTCGGATATCGGCAACAGCCTCCCTCCCAGTCCTCAGCAGGTACAACATCAAACACGACCGAAGTTCCGACGAGGATAGCTCATCTCCGTAA 2718 47.83 MRAHRLSFFIFSLSLFTSFIGAFPLLRDSAISTRRILHQPLFPIGSEPPPDIELTPPPPPDSPSDVPPFFHDPPTTQDQTQPPPPSTNGTMPIPAATAQQSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNPERFPEDSRAPPSSFFYIGTVEPSQSSVVEQNGANGANSSPYRKLNSIKMSDRYRPSPELQPLPPLPKPPMAMSPPALSSSDDESQNTAFHTPQCSSIVSHDDGYFSPASRRSNSVKSCSTASFKNDHMNSNAPPIPHSKRTSPKSRFSVSSTKRNTSQPQPPPPPPPPRPLDDLREIPNSKETMPFSSTRPKFSKPPPPPNLALLQTISNSATYPQIQKTAAPPPPPPPPPPPPPPPPRPPPHPVSYSTPQKLGLSETRMGPVTPPDSSKSQSYSTARTNSSSKSTPTSAPANSANEDVVERINSMERLEYEDTEGSKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDGSKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEVASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKSFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTSDNLQPRSQSKIEDEFRKQGLQVVAGLSRDLSNVKKAAGMDSDVLSSYVTKLEMGLEKVRMVLQFEKPGMHGKFFDSMKTFLKEAEEEIVRIKDDERKALSLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNIKHDRSSDEDSSSP 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3081604 3085556 - CmoCh02G005430.1 Cmo02g00543 376140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00543 905 Coils Coil 801 821 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 200 447 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 205 221 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 305 321 - -
Cmo02g00543 905 PANTHER FORMIN-RELATED 13 905 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmo02g00543 905 PANTHER FORMIN-LIKE PROTEIN 6 13 905 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 410 447 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 225 304 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 352 366 - -
Cmo02g00543 905 SMART it6_source 459 869 IPR015425 -
Cmo02g00543 905 SUPERFAMILY Formin homology 2 domain (FH2 domain) 375 865 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 42 102 - -
Cmo02g00543 905 Pfam Formin Homology 2 Domain 462 854 IPR015425 -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 137 158 - -
Cmo02g00543 905 Gene3D Formin, FH2 domain 453 865 IPR042201 -
Cmo02g00543 905 ProSiteProfiles Formin homology-2 (FH2) domain profile. 459 880 IPR015425 -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 43 70 - -
Cmo02g00543 905 MobiDBLite consensus disorder prediction 367 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00543 - - - cmo:103497354 1377.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01208 Cmo-Chr1:9769759 Cmo02g00543 Cmo-Chr2:3081604 3.91E-122 dispersed
Cmo02g00150 Cmo-Chr2:734161 Cmo02g00543 Cmo-Chr2:3081604 1.17E-110 dispersed
Cmo02g00543 Cmo-Chr2:3081604 Cmo04g01984 Cmo-Chr4:10269132 4.86E-173 dispersed
Cmo02g00543 Cmo-Chr2:3081604 Cmo02g01705 Cmo-Chr2:9770535 1.39E-164 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g937 Blo04g01082 Blo16g00351 . . . Bpe15g00301 . . . . Cma02g00531 . Car02g00366 . . . . . . . . . . . Cla01g01710 Cam01g1796 Cec04g1443 Cco04g1507 Clacu01g1821 Cmu01g1699 Cre04g1372 Cone6ag1454 Cone9ag1375 . . Lsi01g00902 . . Cme08g00643 . . Bda11g01477 . Bpe13g00127 . Bma03g01142 Bma06g00347 Sed14g0912 Cmo02g00543 . . . . . . Cpe05g01150 Bhi10g01479 Tan05g1655 Cmetu11g1138 . Hepe08g0488 . . Cla02g00812 Cam02g0859 Cec02g0866 Cco02g0897 Clacu02g0858 Cmu02g0849 Cre02g1167 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01984 . 446 922 FH2 protein (formin) Gene Family AT3G25500 65.2 6.2e-164 575.9
Cmo02g00543 . 463 885 FH2 protein (formin) Gene Family AT3G25500 62.3 2.1e-140 497.7
Cmo10g01196 CCT,CST 489 890 FH2 protein (formin) Gene Family AT3G25500 50.7 2.3e-102 371.3
Cmo11g01174 CST 382 778 FH2 protein (formin) Gene Family AT3G25500 51.1 1.1e-101 369.0
Cmo02g01705 . 621 1069 FH2 protein (formin) Gene Family AT2G43800 60.4 5.6e-142 502.7
Cmo19g00201 . 554 1061 FH2 protein (formin) Gene Family AT2G43800 53.1 6.9e-132 469.2
Cmo02g00543 . 463 901 FH2 protein (formin) Gene Family AT2G43800 54.8 6.3e-125 446.0
Cmo01g01208 CST 511 649 FH2 protein (formin) Gene Family AT4G15200 67.1 5.2e-46 183.0
Cmo09g00918 CST 586 724 FH2 protein (formin) Gene Family AT4G15200 65.7 5.7e-45 179.5
Cmo09g00918 CST 586 1049 FH2 protein (formin) Gene Family AT5G54650 64.4 3.1e-164 576.6
Cmo02g00150 . 471 969 FH2 protein (formin) Gene Family AT5G54650 56.9 9.7e-150 528.5
Cmo02g01705 . 624 1025 FH2 protein (formin) Gene Family AT5G54650 50.6 1.4e-103 375.2
Cmo02g00543 . 29 904 FH2 protein (formin) Gene Family AT5G67470 57.3 2.2e-226 783.1
Cmo04g01984 . 466 918 FH2 protein (formin) Gene Family AT5G67470 60.0 1.3e-133 474.9
Cmo02g01705 . 604 1067 FH2 protein (formin) Gene Family AT5G67470 57.9 1.2e-131 468.4
Cmo19g00201 . 544 1061 FH2 protein (formin) Gene Family AT5G67470 53.1 4.7e-128 456.4
Cmo11g01174 CST 382 780 FH2 protein (formin) Gene Family AT5G67470 51.0 1.5e-102 371.7
Cmo04g00319 . 351 827 FH2 protein (formin) Gene Family AT1G59910 51.3 5.0e-125 446.4
Cmo02g01705 . 645 1026 FH2 protein (formin) Gene Family AT5G48360 51.8 2.3e-99 360.9
Cmo02g00543 . 487 862 FH2 protein (formin) Gene Family AT5G48360 50.5 2.3e-91 334.3
Cmo11g01174 CST 171 780 FH2 protein (formin) Gene Family AT3G05470 57.3 8.6e-159 558.5
Cmo01g01208 CST 509 923 FH2 protein (formin) Gene Family AT3G05470 50.1 5.8e-107 386.3
Cmo02g00543 . 467 861 FH2 protein (formin) Gene Family AT3G05470 51.4 3.2e-105 380.6
Cmo02g01701 . 955 1266 FH2 protein (formin) Gene Family AT1G42980 50.2 4.0e-68 255.8
Cmo02g01701 . 90 1273 FH2 protein (formin) Gene Family AT1G31810 66.0 0.0e+00 1200.3
Cmo19g00208 . 1 394 FH2 protein (formin) Gene Family AT1G31810 68.9 4.1e-175 613.2
Cmo19g00208 . 1046 1198 FH2 protein (formin) Gene Family AT1G31810 69.9 7.7e-49 193.7
Cmo11g00189 . 1 384 FH2 protein (formin) Gene Family AT1G31810 51.4 6.8e-122 436.4
Cmo11g00187 CST 1 287 FH2 protein (formin) Gene Family AT1G31810 68.3 1.3e-104 379.0
Cmo10g00227 CST 1190 1511 FH2 protein (formin) Gene Family AT5G07650 75.2 5.7e-130 462.6
Cmo01g00847 . 974 1299 FH2 protein (formin) Gene Family AT5G07650 66.0 5.2e-115 412.9
Cmo11g00187 CST 1 293 FH2 protein (formin) Gene Family AT5G07650 72.0 1.3e-113 408.3
Cmo02g01701 . 939 1270 FH2 protein (formin) Gene Family AT5G07650 60.8 3.0e-110 397.1
Cmo01g01711 CST 1026 1361 FH2 protein (formin) Gene Family AT5G07650 62.5 3.9e-110 396.7
Cmo09g00417 CST 1044 1366 FH2 protein (formin) Gene Family AT5G07650 63.2 1.6e-108 391.3
Cmo10g00505 . 884 1203 FH2 protein (formin) Gene Family AT5G07650 61.1 1.5e-106 384.8
Cmo11g00464 . 912 1231 FH2 protein (formin) Gene Family AT5G07650 61.7 2.6e-106 384.0
Cmo13g01141 . 1551 1834 FH2 protein (formin) Gene Family AT5G07650 64.3 2.7e-103 374.0
Cmo10g00227 CST 1115 1504 FH2 protein (formin) Gene Family AT5G07770 68.0 1.3e-139 494.2
Cmo01g00847 . 897 1299 FH2 protein (formin) Gene Family AT5G07770 60.0 7.8e-124 441.8
Cmo09g00417 CST 975 1365 FH2 protein (formin) Gene Family AT5G07770 59.4 4.4e-119 426.0
Cmo01g01711 CST 963 1353 FH2 protein (formin) Gene Family AT5G07770 58.9 3.7e-118 422.9
Cmo02g01701 . 875 1264 FH2 protein (formin) Gene Family AT5G07770 56.8 8.3e-118 421.8
Cmo10g00505 . 807 1195 FH2 protein (formin) Gene Family AT5G07770 56.2 5.6e-114 409.1
Cmo11g00464 . 835 1223 FH2 protein (formin) Gene Family AT5G07770 56.4 9.5e-114 408.3
Cmo13g01141 . 1460 1834 FH2 protein (formin) Gene Family AT5G07770 57.1 1.6e-113 407.5
Cmo11g00187 CST 1 283 FH2 protein (formin) Gene Family AT5G07770 71.0 4.6e-108 389.4
Cmo09g00417 CST 949 1373 FH2 protein (formin) Gene Family AT3G32400 74.4 7.1e-171 597.8
Cmo01g01711 CST 938 1363 FH2 protein (formin) Gene Family AT3G32400 72.1 1.8e-166 583.2
Cmo11g00464 . 806 1232 FH2 protein (formin) Gene Family AT3G32400 65.0 4.2e-147 518.8
Cmo10g00505 . 792 1204 FH2 protein (formin) Gene Family AT3G32400 64.5 2.6e-144 509.6
Cmo10g00227 CST 1115 1511 FH2 protein (formin) Gene Family AT3G32400 66.0 7.0e-142 501.5
Cmo02g01701 . 875 1269 FH2 protein (formin) Gene Family AT3G32400 66.0 3.5e-141 499.2
Cmo01g00847 . 868 1305 FH2 protein (formin) Gene Family AT3G32400 55.1 4.1e-126 449.1
Cmo13g01141 . 1445 1837 FH2 protein (formin) Gene Family AT3G32400 52.7 1.3e-111 401.0
Cmo11g00187 CST 1 293 FH2 protein (formin) Gene Family AT3G32400 67.9 7.8e-109 391.7
Cmo19g00208 . 1048 1198 FH2 protein (formin) Gene Family AT3G32400 55.6 2.5e-38 157.5
Cmo09g00417 CST 57 1373 FH2 protein (formin) Gene Family AT2G25050 55.9 0.0e+00 1170.6
Cmo01g01711 CST 1 1363 FH2 protein (formin) Gene Family AT2G25050 50.1 0.0e+00 1122.5
Cmo11g00464 . 1 1232 FH2 protein (formin) Gene Family AT2G25050 53.2 2.0e-296 1016.1
Cmo10g00505 . 1 1204 FH2 protein (formin) Gene Family AT2G25050 53.5 1.1e-294 1010.4
Cmo11g00189 . 1 378 FH2 protein (formin) Gene Family AT2G25050 62.1 3.8e-138 490.3
Cmo11g00187 CST 1 293 FH2 protein (formin) Gene Family AT2G25050 65.0 1.4e-108 392.1
Cmo19g00208 . 1048 1198 FH2 protein (formin) Gene Family AT2G25050 56.9 1.5e-38 159.5
Cmo10g00227 CST 1116 1511 FH2 protein (formin) Gene Family AT5G07780 62.7 6.8e-123 438.3
Cmo01g00847 . 898 1305 FH2 protein (formin) Gene Family AT5G07780 54.0 1.5e-106 384.0
Cmo09g00417 CST 976 1366 FH2 protein (formin) Gene Family AT5G07780 54.3 1.6e-103 374.0
Cmo02g01701 . 876 1265 FH2 protein (formin) Gene Family AT5G07780 53.0 2.1e-103 373.6
Cmo01g01711 CST 964 1354 FH2 protein (formin) Gene Family AT5G07780 53.5 7.8e-103 371.7
Cmo11g00464 . 842 1231 FH2 protein (formin) Gene Family AT5G07780 53.3 5.2e-99 359.0
Cmo10g00505 . 814 1195 FH2 protein (formin) Gene Family AT5G07780 52.8 6.8e-99 358.6
Cmo11g00187 CST 1 293 FH2 protein (formin) Gene Family AT5G07780 67.0 2.0e-98 357.1
Cmo13g01141 . 1475 1837 FH2 protein (formin) Gene Family AT5G07780 53.0 2.4e-96 350.1
Cmo10g00227 CST 1 1520 FH2 protein (formin) Gene Family AT5G07740 60.4 0.0e+00 1131.3
Cmo11g00189 . 1 655 FH2 protein (formin) Gene Family AT5G07740 57.9 1.4e-194 678.3
Cmo11g00187 CST 1 295 FH2 protein (formin) Gene Family AT5G07740 79.7 4.9e-128 457.2
Cmo19g00208 . 1046 1198 FH2 protein (formin) Gene Family AT5G07740 55.8 7.6e-36 151.0
Cmo10g00227 CST 1189 1518 FH2 protein (formin) Gene Family AT5G07760 74.4 1.5e-128 458.0
Cmo01g00847 . 973 1305 FH2 protein (formin) Gene Family AT5G07760 65.6 1.8e-113 407.9
Cmo11g00187 CST 1 293 FH2 protein (formin) Gene Family AT5G07760 71.8 3.5e-112 403.7
Cmo01g01711 CST 1038 1361 FH2 protein (formin) Gene Family AT5G07760 64.3 1.0e-108 392.1
Cmo09g00417 CST 1050 1381 FH2 protein (formin) Gene Family AT5G07760 63.2 1.8e-108 391.3
Cmo02g01701 . 949 1270 FH2 protein (formin) Gene Family AT5G07760 62.2 1.8e-108 391.3
Cmo11g00464 . 911 1231 FH2 protein (formin) Gene Family AT5G07760 63.8 3.4e-107 387.1
Cmo10g00505 . 883 1202 FH2 protein (formin) Gene Family AT5G07760 62.7 5.7e-107 386.3
Cmo13g01141 . 1550 1837 FH2 protein (formin) Gene Family AT5G07760 62.3 1.3e-98 358.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00543 Cmo_Chr02 FPKM 55.081341 58.732239 51.181076 52.499947 23.686068 18.420195 23.219877 16.969418 17.755854 16.990328