Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00551 ATGGATACCTTGTTCAGGCTTGTCTCCAACCTTCATCAACCTTCTGATCAATCTTACAACTCAAGCACCAGCTCCAAGAATTCTGTTGATCTTCAAAATCATTGCTTCCTCATCCCATCACCACCTGAACAATGCTTCACCAGCTCCTTCATGGTGGATCAACAACATTTCTCTGCCTCCTCTTCTTCCAACCATCGTCCTGATAACGACCATGTTCATCAAGATCACGAGTATATAAGTACTATCAATTCTACTGATCGATGGTTCGCCCCTTTAGACGTGAACTTGGAATTCTCTAATGGTTGGGCTTCTACGTTGATCGTCCAAACTGCCATTGCCATTGTTGATAACAACGCTTCTCGAATCCAACAACTCATGTGGATGCTTAACGAGCTTGGTTCGCCCTATGGCGATATTGATCAAAAATTGGCTTTTTACTTTCTTCGAGCTATGTTTAGTCATGTCACGAACTCTGGTGAACGGTGCTACCGAACCTTGGCAATGGTGTCGGAGAAACGGTCTTGTTTCGCGTCGATGAGAAGAATGGTATTGAAGTTTCAAGAGGTGAGTCCATGGATGACGTTTGGTCATGTTGCTTCAAATGGTGTTATCATGGAGGCTTTTGAAGGAGAGAAGAAGTTGCATATAATTGATATTAGTAACTCCTTTTGTACTCAATGGCCAACTTTCCTTGAAGCTCTAGCATCTCGGTCAGACGAAACTCCACACCTTAGGCTCACGACACTAGTCGCAGCCAGATCGGATAAGAAGGTGATGAGAGAAATTAGCAGAAGAATAGAGAAATTCGCGAGGCTTATGGGGGTTCCCTTCAAATTCAAAGCAATATATTACTCCGGCGACATTTCACAGCTAAATTTCACGGAGTTAGGGGTTAATGACGACGAAGCCCTTGCAATTAACTGCGTCGGCGCCTTCCGCTCCGTCACGCCGGTCGAAAACCGCCGCGATTTTCTGATTTCACGGTTCGGAGCTTTGCGGCCGAGGATAATCACTGTGGTGGAGGAGCAGGCAGATCTCGATAGCGACGGCGTTGACTTTGTCAAAGACGTTCAAGAATGTTTACGGTGGTTTAGGGTTTACTTTGATTCCTTGGACGGAAGTTTCCCTTCCACAAGTGATGAAAAGTTGATGCTCGAACGCGCCGCTGGACGCGCTATCGTGGACTTGCTTGCACGCGCGCCAGCGGAGTGTGTTGAGAGGCGCGAGACGGCTGCGCGTTGGGCTCGTCGTTTGCATGAGGGCGGTTTCAAACCGGTGTCGTTTAGTGAGGATGTAAACGACGACGTACGTGCGCTTTTAAGGAGGTATAGGGATGGGTGGACGGTGTTGGATGACGGCGAGGACGCCGATGCCGGAATTTTCTTGGCTTGGAAGGGGCAGGCGGTGGTCTGGGCCGCCGCATGGACGCCTGAACCACTGGACGGAGAGAAGAGTCGCCAGAGTAGTAGTTCACATTGA 1479 48.55 MDTLFRLVSNLHQPSDQSYNSSTSSKNSVDLQNHCFLIPSPPEQCFTSSFMVDQQHFSASSSSNHRPDNDHVHQDHEYISTINSTDRWFAPLDVNLEFSNGWASTLIVQTAIAIVDNNASRIQQLMWMLNELGSPYGDIDQKLAFYFLRAMFSHVTNSGERCYRTLAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVASNGVIMEAFEGEKKLHIIDISNSFCTQWPTFLEALASRSDETPHLRLTTLVAARSDKKVMREISRRIEKFARLMGVPFKFKAIYYSGDISQLNFTELGVNDDEALAINCVGAFRSVTPVENRRDFLISRFGALRPRIITVVEEQADLDSDGVDFVKDVQECLRWFRVYFDSLDGSFPSTSDEKLMLERAAGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALLRRYRDGWTVLDDGEDADAGIFLAWKGQAVVWAAAWTPEPLDGEKSRQSSSSH 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3125396 3127773 + CmoCh02G005510.1 Cmo02g00551 376148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00551 492 Pfam GRAS domain family 105 476 IPR005202 -
Cmo02g00551 492 ProSiteProfiles GRAS family profile. 94 476 IPR005202 -
Cmo02g00551 492 PANTHER PROTEIN SHORT-ROOT 1 476 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cmo02g00551 492 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 476 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00551 Cmo-Chr2:3125396 Cmo07g00661 Cmo-Chr7:2976038 0 dispersed
Cmo02g00551 Cmo-Chr2:3125396 Cmo08g00195 Cmo-Chr8:1140287 1.29E-135 transposed
Cmo02g00551 Cmo-Chr2:3125396 Cmo17g00596 Cmo-Chr17:6345899 1.57E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9226 PF03514 GRAS 6.60E-95 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00551 - - cpep:111795097 937.176