Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00564 ATGAAAAACAAAGGAAGAAGCGTACTAAGCTTATTCACCAGCTGTTCTCCAAAGCGACAACTGAAACAAATTCCCTCATCCACCCAACCCAAACAGAGGTCCAAATCCATCTCCGACTCCTCAGCCTCCTCAAAGCATGTCCGTGTTAACTTGGAGGAGATCAAATGGGTGTTCGACAAATTCGACACGAACAAAGACGGGAAGATCTCGTTTGAGGAGTACAAGGCTGCGCATGGAGCGATGTCGGGAAGCAAAGAGATCTCGGATGCGGAAGCGGCGAAGTCGTTCAAGCTTGTGGATGCGGATGGAGATGGATTTGTGGAGTTGAAGGAGTTCGTGGAGTTGTACACGATGAGCGGTGGGGAGGTGAAGATGGGGGACATACAAAGCGCTTTCAAAGTGTATGATTCTAATGGAGATGGCAAGATAAGCGCGGAGGAGGTGATGGAGATCATGAAGATATTGGGGGAGAGCACCACCCTGAAGGCCTGCCGCCAAATGGTGAAGGGTGTGGACAAGGATGGGGATGGCTTTATTGATATCGATGAGTTTTCGAGCCTCATGGGTTCGTATTCGTTTAAGCATTAG 588 49.15 MKNKGRSVLSLFTSCSPKRQLKQIPSSTQPKQRSKSISDSSASSKHVRVNLEEIKWVFDKFDTNKDGKISFEEYKAAHGAMSGSKEISDAEAAKSFKLVDADGDGFVELKEFVELYTMSGGEVKMGDIQSAFKVYDSNGDGKISAEEVMEIMKILGESTTLKACRQMVKGVDKDGDGFIDIDEFSSLMGSYSFKH 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3257479 3258595 - CmoCh02G005640.1 Cmo02g00564 376161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00564 195 ProSitePatterns EF-hand calcium-binding domain. 62 74 IPR018247 -
Cmo02g00564 195 ProSiteProfiles EF-hand calcium-binding domain profile. 159 194 IPR002048 GO:0005509
Cmo02g00564 195 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 16 192 - -
Cmo02g00564 195 MobiDBLite consensus disorder prediction 17 46 - -
Cmo02g00564 195 Gene3D - 15 123 - -
Cmo02g00564 195 SUPERFAMILY EF-hand 51 189 IPR011992 -
Cmo02g00564 195 ProSiteProfiles EF-hand calcium-binding domain profile. 123 158 IPR002048 GO:0005509
Cmo02g00564 195 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 16 192 - -
Cmo02g00564 195 Pfam EF-hand domain pair 128 188 IPR002048 GO:0005509
Cmo02g00564 195 Pfam EF-hand domain pair 52 116 IPR002048 GO:0005509
Cmo02g00564 195 SMART efh_1 91 119 IPR002048 GO:0005509
Cmo02g00564 195 SMART efh_1 53 81 IPR002048 GO:0005509
Cmo02g00564 195 SMART efh_1 127 155 IPR002048 GO:0005509
Cmo02g00564 195 SMART efh_1 163 191 IPR002048 GO:0005509
Cmo02g00564 195 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
Cmo02g00564 195 Gene3D - 124 194 - -
Cmo02g00564 195 ProSitePatterns EF-hand calcium-binding domain. 136 148 IPR018247 -
Cmo02g00564 195 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Cmo02g00564 195 ProSitePatterns EF-hand calcium-binding domain. 172 184 IPR018247 -
Cmo02g00564 195 ProSiteProfiles EF-hand calcium-binding domain profile. 87 122 IPR002048 GO:0005509
Cmo02g00564 195 MobiDBLite consensus disorder prediction 17 45 - -
Cmo02g00564 195 CDD EFh 127 188 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00564 K13448 CML; calcium-binding protein CML - csv:101205694 270.011
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00564 Cmo11g01358 CCT
Cmo02g00564 Cmo19g00627 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00564 Cmo-Chr2:3257479 Cmo11g01358 Cmo-Chr11:9443657 2.33E-42 dispersed
Cmo02g00564 Cmo-Chr2:3257479 Cmo04g02207 Cmo-Chr4:16448639 2.27E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g423 . . . . . . . . Cmo19g00627 Cmo11g01358 . . . . Sed05g3402 Cpe04g00276 Cpe15g00493 Bhi05g01126 Tan02g0902 Cmetu11g1775 . Hepe02g0581 . . Cla02g00595 Cam02g0624 Cec02g0624 Cco02g0639 Clacu02g0628 Cmu02g0624 Cre02g0948 Cone11ag0284 . . . . Csa07g00766 . Cme01g00043 . . . . . . . . . Cmo02g00564 . . Cma19g00609 Car11g01088 . . . . . . . . . . . . . . . . . . . Chy01g00049 Cme11g00303
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011002 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00564 Cmo_Chr02 FPKM 19.860491 25.061264 26.598122 25.92737 30.33728 18.556204 29.150103 32.888779 30.844639 32.959282