Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00566 ATGGAGTATGAGGGCACTGGTAAAAACGCCGTATCCTTGAGATCTTCTGTGGCCGCGGTGCTCGAGGTGGAGGACGACGACGGGGACATGACGCTTGCTCAGTTGTCCAGGAACCCCCGGGACAGGCTTGCTTCCTCCTCGGGTAAAACGCGGAAGCAAATGGAGGACAATCCGATGCTTCAGAAGGTTAAACAGAGACTTGCGGATTGGAAAACTAGCCATGCTGTAACGGGTCCTGGAGGGAAGTTTATGAGCTTTGAGCAAAATAAGGCAGCATATGAGGAGCAATGCTCACCTGGGGAATTTAAGTCGTCCGCTGTGATGCGAGCACTTGAGGTTCGATCAAAATTGGAACAGGAATTTCCTAGCTTCGTGAAGTCATTGGTCAGATCACATGTTGCTAGCTGTTTTTGGATGGGACTTCCTGCGGTATTCTGCAAGTCATACTTGCCAGTAAGAGATAGTACAATGATCCTGGAAAATGAAGCTGGGAGACAATTTCAAGTAAAATATATCGCACATAAGACGGGGTTGAGTGCTGGATGGAGACAATTTTCTGCTGCACACAAGTTACTTGAGGGTGATGTTCTTGTCTTTCAACTGGTAGCGCCCACAAAATTTAAGGTAATATCTTGGATTTTTTCATTATATAGCGTTTATGTTATAAGGACATGTGATGTGACAGAAATGGATGGTACCCTTGGCCTACTAAACTTGGAGTCTCATACTAAACAAAGTGATGCAGGAAAAGATACTGAAAATAAGGGAGACGCGGCTGGCGACATTTCGATCAAGAAACGAGCAAAGTCTGCTGTACCCGACACGACTGAAAGGCTGAGAAATCCAAGCCCGTTGAGGTCAAGACCAAGGCAGCAGGTAGCAGCAGAGCATTCTGAACATACCAGTGAAGAGGTTGTCTCAGAAATAGTGGAGGTTTTCAGCTTCTATCAGCCTGCGGTTCCATTTAAGAAAGTCAAAAGCTTCGAGGACTTCAACATTGTAATCGATGGGATATCGATAAATGCAGAACTGCCAAGAGACCTGCGGAAGAGGTATTATAAACTTTGCTGCAGTCAGGACATGTTTCTCCATGAAAATCTCATCCCAGGCATGAACCGCAACTTAGTCACCGGAGTTATTTCCGAAACAATAACCATCGCCAACGCCATTAAAGCTTGCGACCTCTCTACTTCACGGGAGGAGTTTTCTACATGGGACAAAACCCTCCGAGCCTTTCAGCTCTTCGGTATGAATGTTGGGTTCTTACGTAATCGTCTCCATAGGCTGGCGAATCTTGCTTATGAGTCGGAGAATGCGTTGGATGTAAGAACGCTGGTAGATGCTAAAAATGACCAAGTGCATGTGCATGATGAAATCAGAAACATTGAGACGAAGCTTGTTGAGTTGAAGGAAGCTTGTGATAAATTTGGAGCTGCCATTGATGGCTTAGAGTCAAAAGCTGAGGTGTACAAGTCCAAGTTCCTGGAAGAAGTTTCTGCTCCATGGTAA 1509 45.66 MEYEGTGKNAVSLRSSVAAVLEVEDDDGDMTLAQLSRNPRDRLASSSGKTRKQMEDNPMLQKVKQRLADWKTSHAVTGPGGKFMSFEQNKAAYEEQCSPGEFKSSAVMRALEVRSKLEQEFPSFVKSLVRSHVASCFWMGLPAVFCKSYLPVRDSTMILENEAGRQFQVKYIAHKTGLSAGWRQFSAAHKLLEGDVLVFQLVAPTKFKVISWIFSLYSVYVIRTCDVTEMDGTLGLLNLESHTKQSDAGKDTENKGDAAGDISIKKRAKSAVPDTTERLRNPSPLRSRPRQQVAAEHSEHTSEEVVSEIVEVFSFYQPAVPFKKVKSFEDFNIVIDGISINAELPRDLRKRYYKLCCSQDMFLHENLIPGMNRNLVTGVISETITIANAIKACDLSTSREEFSTWDKTLRAFQLFGMNVGFLRNRLHRLANLAYESENALDVRTLVDAKNDQVHVHDEIRNIETKLVELKEACDKFGAAIDGLESKAEVYKSKFLEEVSAPW 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3282669 3286599 - CmoCh02G005660.1 Cmo02g00566 376163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00566 502 MobiDBLite consensus disorder prediction 30 56 - -
Cmo02g00566 502 CDD B3_DNA 122 209 IPR003340 GO:0003677
Cmo02g00566 502 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 26 439 IPR044837 -
Cmo02g00566 502 Pfam B3 DNA binding domain 124 214 IPR003340 GO:0003677
Cmo02g00566 502 SUPERFAMILY DNA-binding pseudobarrel domain 118 210 IPR015300 -
Cmo02g00566 502 MobiDBLite consensus disorder prediction 267 300 - -
Cmo02g00566 502 ProSiteProfiles B3 DNA-binding domain profile. 124 215 IPR003340 GO:0003677
Cmo02g00566 502 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 26 439 - -
Cmo02g00566 502 SMART B3_2 124 216 IPR003340 GO:0003677
Cmo02g00566 502 Gene3D - 103 216 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00566 - - - csv:101211030 743.421
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00566 Cmo19g00628 CCT
Cmo02g00566 Cmo19g00628 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00566 Cmo-Chr2:3282669 Cmo19g00628 Cmo-Chr19:6853976 6.86E-35 dispersed
Cmo02g00566 Cmo-Chr2:3282669 Cmo04g00537 Cmo-Chr4:2671750 6.13E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g431 . . . . . . . . Cmo19g00628 . . . . . Sed11g0972 . Cpe15g00494 Bhi05g01128 Tan02g1874 Cmetu03g0548 . Hepe02g0579 . . . . . . . . . . . . . . Csa07g00768 . . . . . . . . . . . Cmo02g00566 . Cma11g01757 Cma19g00610 . Car19g00463 . . . . . . . . . . . . . . . . . . . .
Vvi7g1082 . . . . . . . Bma15g00925 . . Cma02g00557 . Car02g00387 . . . . . . . . . . . . . . . . . . Cone6ag1385 Cone9ag1316 . . . . Chy11g00178 . . . . . . . . . Sed05g3398 Cmo02g00566 . . . . . . . Bhi10g02179 Tan07g1114 Cmetu11g0700 . . . . . . . . . . . . . . Cme11g00289
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009683 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9228 PF02362 B3 1.50E-15 CL0405 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00566 Cmo_Chr02 FPKM 13.736518 13.962833 15.270399 16.525377 17.319586 17.186375 18.186138 16.080305 15.889542 15.40912