Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00567 ATGGTGAGGAAATGTAGAGCAGTTGCAGAGATTGCAGTCATGGAGGTGGACGTCAGGAGGACTACCAGACCTCCACCTGATTTGGAGGATGTACCGCATTCCTCCACCAACACTTCCGCTAACAAGAGGCAGATCACCGCTGGAACTGACTTTCACTTCACCACCGCTACGACGTCGTTTGTCAAGCTCCCGAGACGGAGACGCCGCCTTGTTTTGCCGCTGGAGAGTTCTCTCCGGCAGCCGAGCACGACGTCCACGGAGGAGAGGAGCTCTACTAGTCCTATCTCCGATGACGATGCGTCCGCTTTTTGCTGCTCAAGTAACGGTTGCAGTGAGGTTGTTGAGGAGAGTAGCAAGTTTGTAGATCTGGAGGATGAGGAAAAAGATGAACATGGAATCGCGTACAAATCTTGCAGAGAAAGGAGAGAAACGACTCCGTCTAGCCATTTCCAATCAACGATGTCCAGCGATATGGAGTCTCTGGCAATGAAAACCAAGGCAACTTCCGGCAATGGATCTTCGTCGTCGTCAATGAAGAAGCCAGCGGAATCGGAGCTCGAAGAATTCTTCACCGCCGCCGAGAAAAAAATCCAGAAACGTTTCGCAGAGAAGTATAATTACGACATTGTTGAGGACGTTCCGTTGGAAGGACGTTACGAATGGATTCGATTAAAGCCATAA 681 50.37 MVRKCRAVAEIAVMEVDVRRTTRPPPDLEDVPHSSTNTSANKRQITAGTDFHFTTATTSFVKLPRRRRRLVLPLESSLRQPSTTSTEERSSTSPISDDDASAFCCSSNGCSEVVEESSKFVDLEDEEKDEHGIAYKSCRERRETTPSSHFQSTMSSDMESLAMKTKATSGNGSSSSSMKKPAESELEEFFTAAEKKIQKRFAEKYNYDIVEDVPLEGRYEWIRLKP 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3287684 3289547 - CmoCh02G005670.1 Cmo02g00567 376164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00567 226 MobiDBLite consensus disorder prediction 72 100 - -
Cmo02g00567 226 Gene3D p27 178 226 IPR044898 -
Cmo02g00567 226 MobiDBLite consensus disorder prediction 147 180 - -
Cmo02g00567 226 MobiDBLite consensus disorder prediction 140 181 - -
Cmo02g00567 226 MobiDBLite consensus disorder prediction 76 100 - -
Cmo02g00567 226 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 7 4 226 - -
Cmo02g00567 226 PIRSF CKI_KRP_plant 1 226 IPR044275 GO:0004861|GO:0045736|GO:0051726
Cmo02g00567 226 Pfam Cyclin-dependent kinase inhibitor 182 223 IPR003175 GO:0004861|GO:0005634|GO:0051726
Cmo02g00567 226 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 4 226 IPR044275 GO:0004861|GO:0045736|GO:0051726
Cmo02g00567 226 MobiDBLite consensus disorder prediction 20 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00567 - - - cmax:111470405 277.715
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00567 Cmo11g01354 CCT
Cmo02g00567 Cmo19g00630 CCT
Cmo02g00567 Cmo11g01354 ECH
Cmo02g00567 Cmo19g00630 ECH
Cmo02g00567 Cmo20g01189 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00567 Cmo-Chr2:3287684 Cmo11g01354 Cmo-Chr11:9422647 2.87E-22 dispersed
Cmo14g01940 Cmo-Chr14:14363407 Cmo02g00567 Cmo-Chr2:3287684 4.77E-08 dispersed
Cmo02g00567 Cmo-Chr2:3287684 Cmo20g01189 Cmo-Chr20:11792552 5.93E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g435 . . . . . . Bma05g00520 . Cmo19g00630 Cmo11g01354 . . . . Sed10g2039 Cpe04g00273 Cpe15g00495 Bhi05g01129 Tan02g0899 Cmetu01g0736 . Hepe02g0578 . . Cla02g00593 Cam02g0622 Cec02g0621 Cco02g0637 Clacu02g0626 Cmu02g0622 Cre02g0946 . . . . Lsi10g00565 Csa07g00769 . Cme01g00040 . . . . . . . . . Cmo02g00567 . Cma11g01758 Cma19g00611 . Car19g00464 . . . . . . . . . . . . . . . . . . Chy01g00046 .
Vvi7g1084 Blo04g01045 . . . Bpe06g00215 Bpe15g00341 . . . . Cma02g00558 Cma20g01162 Car02g00388 Car20g01003 . . Cpe16g00001 . . . . . . . . . . . . . . . Cone9ag1315 Cone8ag0121 Cone12ag0117 . . . . . . . . Bpe13g00076 . . . Sed05g3394 Cmo02g00567 Cmo20g01189 . . . . . . Bhi10g02181 Tan07g1107 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010109 0 2 2 0 3 1 1 1 1 0 1 1 2 0 0 2 1 3 2 1 0 1 1 1 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00567 Cmo_Chr02 FPKM 0.24311 0.743636 1.000085 1.516255 2.712707 2.744272 2.208513 0.445385 0.66489 0.360475